ArticleNature communications2016
Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ.
Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.
What it found
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
106 citing papers in PubMed.
- SIMworks-an integrated software suite for quality-controlled augmented quantitative structured illumination microscopy.Nature protocols · 2026Review
- A practical workflow for analyzing organelle spatial proximity with super-resolution microscopy.Biochemistry and biophysics reports · 2026Article
- AI-empowered super-resolution microscopy: a revolution in nanoscale cellular imaging.Nature methods · 2026Review
- Untrained Position-Encoded Multilayer Perceptron Network for Structured Illumination Microscopy Reconstruction.Chemical & biomedical imaging · 2026Article
- Super-Resolution Structured Illumination Microscopy to Study Endocytosis and Cellular Nanoparticle Uptake.ACS nano · 2026Review
- Visualizing intraorganellar ultrastructures, dynamics, and interactions with open-access background-free Lock-in-SIM.Nature communications · 2025Article
- Nanoscale Imaging of Biological Tissues: Techniques, Challenges and Emerging Frontiers.Nanomaterials (Basel, Switzerland) · 2025Review
- Cellular optical imaging techniques: a dynamic advancing frontier.Science China. Life sciences · 2025Review
- Accelerated Super-Resolution Reconstruction for Structured Illumination Microscopy Integrated with Low-Light Optimization.Micromachines · 2025Article
- Principal component analysis for three-dimensional structured illumination microscopy (PCA-3DSIM).Light, science & applications · 2025Article
- Synthesis of Arbitrary Interference Patterns Using a Single Galvanometric Mirror and Its Application to Structured Illumination Microscopy.ACS photonics · 2025Article
- Article
- Advancing Multicolor Super-Resolution Volume Imaging: Illuminating Complex Cellular Dynamics.JACS Au · 2025Review
- Dark-based optical sectioning assists background removal in fluorescence microscopy.Nature methods · 2025Article
- Bayesian deep-learning structured illumination microscopy enables reliable super-resolution imaging with uncertainty quantification.Nature communications · 2025Article
- A High-Resolution Microscopy System for Biological Studies of Cold-Adapted Species Under Physiological Conditions.Small methods · 2025Article
- LED-based multicolor extended resolution transmission fluorescence microscopy.Journal of biomedical optics · 2025Article
- Fully automated multicolour structured illumination module for super-resolution microscopy with two excitation colours.Communications engineering · 2025Article
- Fast reconstruction and optical-sectioning three-dimensional structured illumination microscopy.Innovation (Cambridge (Mass.)) · 2025Article
- Approaching maximum resolution in structured illumination microscopy via accurate noise modeling.Npj imaging · 2025Article
46 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Super-resolved structured illumination microscopy (SR-SIM) is an important tool for fluorescence microscopy. SR-SIM microscopes perform multiple image acquisitions with varying illumination patterns, and reconstruct them to a super-resolved image. In its most frequent, linear implementation, SR-SIM doubles the spatial resolution. The reconstruction is performed numerically on the acquired wide-field image data, and thus relies on a software implementation of specific SR-SIM image reconstruction algorithms. We present fairSIM, an easy-to-use plugin that provides SR-SIM reconstructions for a wide range of SR-SIM platforms directly within ImageJ. For research groups developing their own implementations of super-resolution structured illumination microscopy, fairSIM takes away the hurdle of generating yet another implementation of the reconstruction algorithm. For users of commercial microscopes, it offers an additional, in-depth analysis option for their data independent of specific operating systems. As a modular, open-source solution, fairSIM can easily be adapted, automated and extended as the field of SR-SIM progresses.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.