Evidence map›Paper›PMID 26995783›Full record

ArticleJournal of molecular modeling2016

Structural Insight for Roles of DR5 Death Domain Mutations on Oligomerization of DR5 Death Domain-FADD Complex in the Death-Inducing Signaling Complex Formation: A Computational Study.

Hongyi Yang, Yuhua Song

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Article in Journal of molecular modeling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Hongyi YangDepartment of Chemistry, The University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Yuhua SongDepartment of Biomedical Engineering, The University of Alabama at Birmingham, 803 Shelby Interdisciplinary Biomedical Research Building, 1825 University Boulevard, Birmingham, AL, 35294, USA. yhsong@uab.edu.
University of Alabama at Birmingham · US

Funding

Protein interactions underlying Fas-mediated DISC in CholangiocarcinomaK25CA140791 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SONG, YUHUA · 2009 to 2013
$769k
NCI NIH HHS 5K25CA140791
6 · The paper itself

Abstract

Death receptor 5 (DR5)-induced apoptosis that prioritizes the death of tumor cells has been proposed as one of the promising cancer therapies. In this process, oligomerized DR5 death domain (DD) binding to Fas-associated death domain (FADD) leads to FADD activating caspase-8, which marks the formation of the death-inducing signaling complex (DISC) that initiates apoptosis. DR5 DD mutations found in cancer cells have been suggested to play an important pathological role, the mechanism through which those mutants prevent the DR5-activated DISC formation is not clear yet. This study sought to provide structural and molecular insight for the roles of four selected DR5 DD mutations (E355K, E367K, K415N, and L363F) in the oligomerization of DR5 DD-FADD complex during the DISC formation. Results from the molecular dynamics simulations show that the simulated mutants induce conformational, dynamical motions and interactions changes in the DR5 DD-FADD tetramer complex, including changes in a protein's backbone flexibility, less exposure of FADD DED's caspase-8 binding site, reduced H-bonding and hydrophobic contacts at the DR5 DD-FADD DD binding, altered distribution of the electrostatic potentials and correlated motions of residues, and reduced binding affinity of DR5 DD binding to FADD. This study provides structural and molecular insight for the influence of DR5 DD mutations on oligomerization of DR5 DD-FADD complex, which is expected to foster understanding of the DR5 DD mutants' resistance mechanism against DR5-activated DISC formation.

Indexed as

Molecular Dynamics SimulationMutationAmino Acid MotifsAmino Acid SubstitutionBinding SitesCaspase 8Death Domain Receptor Signaling Adaptor ProteinsFas-Associated Death Domain ProteinHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsProtein BindingProtein DomainsProtein MultimerizationProtein Structure, SecondaryQuantum TheoryCASP8 protein, humanCaspase 8Death Domain Receptor Signaling Adaptor ProteinsFADD protein, humanFas-Associated Death Domain ProteinReceptors, TNF-Related Apoptosis-Inducing LigandTNFRSF10B protein, humanDISCDR5 death domain – FADD complex oligomerizationDR5 death domain mutationsMolecular dynamics simulations

Identifiers

PMID26995783
OpenAlexW2307043353

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.