Evidence map›Paper›PMID 26994549›Full record

ArticleProteins2016

Computational analysis of the CB1 carboxyl-terminus in the receptor-G protein complex.

Joong-Youn Shim, Leepakshi Khurana, Debra A Kendall

Abstract read
In one paragraph

Article in Proteins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Joong-Youn ShimDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina, 27514.
Leepakshi KhuranaDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut, 06269-3092.
Debra A KendallDepartment of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut, 06269-3092.

Funding

Determinants of the Cannabinoid Receptor Life CycleR01DA020763 · NIDA · UNIVERSITY OF CONNECTICUT STORRS · PI KENDALL, DEBRA A · 2007 to 2011
$1.5M
The CB1 Cannabinoid Receptor Activation By Protein Molecular Dynamics SimulationsK01DA020663 · NIDA · NORTH CAROLINA CENTRAL UNIVERSITY · PI SHIM, JOONG-YOUN · 2007 to 2011
$557k
NIDA NIH HHS DA020663NIDA NIH HHS DA020763NIDA NIH HHS K01 DA020663NIDA NIH HHS R01 DA020763
6 · The paper itself

Abstract

Despite the important role of the carboxyl-terminus (Ct) of the activated brain cannabinoid receptor one (CB1) in the regulation of G protein signaling, a structural understanding of interactions with G proteins is lacking. This is largely due to the highly flexible nature of the CB1 Ct that dynamically adapts its conformation to the presence of G proteins. In the present study, we explored how the CB1 Ct can interact with the G protein by building on our prior modeling of the CB1-Gi complex (Shim, Ahn, and Kendall, The Journal of Biological Chemistry 2013;288:32449-32465) to incorporate a complete CB1 Ct (Glu416(Ct)-Leu472(Ct)). Based on the structural constraints from NMR studies, we employed ROSETTA to predict tertiary folds, ZDOCK to predict docking orientation, and molecular dynamics (MD) simulations to obtain two distinct plausible models of CB1 Ct in the CB1-Gi complex. The resulting models were consistent with the NMR-determined helical structure (H9) in the middle region of the CB1 Ct. The CB1 Ct directly interacted with both Gα and Gβ and stabilized the receptor at the Gi interface. The results of site-directed mutagenesis studies of Glu416(Ct), Asp423(Ct), Asp428(Ct), and Arg444(Ct) of CB1 Ct suggested that the CB1 Ct can influence receptor-G protein coupling by stabilizing the receptor at the Gi interface. This research provided, for the first time, models of the CB1 Ct in contact with the G protein.

Indexed as

Amino Acid SequenceAnalgesicsBinding SitesCell MembraneCyclohexanolsGene ExpressionGTP-Binding ProteinsGuanosine 5'-O-(3-Thiotriphosphate)HEK293 CellsHumansMolecular Docking SimulationMolecular Dynamics SimulationMutagenesis, Site-DirectedNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Domains3-(2-hydroxy-4-(1,1-dimethylheptyl)phenyl)-4-(3-hydroxypropyl)cyclohexanolAnalgesicsCyclohexanolsGTP-Binding ProteinsGuanosine 5'-O-(3-Thiotriphosphate)Protein SubunitsReceptor, Cannabinoid, CB1Recombinant Proteinscannabinoid receptorcarboxyl-terminusG protein-coupled receptorG protein couplingmolecular dynamicsprotein structuresite-directed mutagenesis

Identifiers

PMID26994549
PMCPMC5482410

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.