Evidence map›Paper›PMID 26994085›Full record

ArticleApplied and environmental microbiology2016

Virulence Gene-Associated Mutant Bacterial Colonies Generate Differentiating Two-Dimensional Laser Scatter Fingerprints.

Atul K Singh, Lena Leprun, Rishi Drolia, Xingjian Bai, Huisung Kim, Amornrat Aroonnual, Euiwon Bae, Krishna K Mishra, Arun K Bhunia

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Petri-plate, bacteria, and laser optical scattering sensor.Frontiers in cellular and infection microbiology · 2022
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Atul K SinghMolecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, USA.ORCID http://orcid.org/0000-0001-7343-3577
Lena LeprunMolecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, USA.
Rishi DroliaMolecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, USA.
Xingjian BaiMolecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, USA.
Huisung KimSchool of Mechanical Engineering, Purdue University, West Lafayette, Indiana, USA.
Amornrat AroonnualMolecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, USA.
Euiwon BaeSchool of Mechanical Engineering, Purdue University, West Lafayette, Indiana, USA.
Krishna K MishraMolecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, USA.
Arun K BhuniaMolecular Food Microbiology Laboratory, Department of Food Science, Purdue University, West Lafayette, Indiana, USA bhunia@purdue.edu.ORCID http://orcid.org/0000-0003-3640-1554
Purdue University West Lafayette · USIvy Tech Community College of Indiana · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledIn this study, we investigated whether a laser scatterometer designated BARDOT (bacterial rapid detection using optical scattering technology) could be used to directly screen colonies of Listeria monocytogenes, a model pathogen, with mutations in several known virulence genes, including the genes encoding Listeria adhesion protein (LAP; lap mutant), internalin A (ΔinlA strain), and an accessory secretory protein (ΔsecA2 strain). Here we show that the scatter patterns of lap mutant, ΔinlA, and ΔsecA2 colonies were markedly different from that of the wild type (WT), with >95% positive predictive values (PPVs), whereas for the complemented mutant strains, scatter patterns were restored to that of the WT. The scatter image library successfully distinguished the lap mutant and ΔinlA mutant strains from the WT in mixed-culture experiments, including a coinfection study using the Caco-2 cell line. Among the biophysical parameters examined, the colony height and optical density did not reveal any discernible differences between the mutant and WT strains. We also found that differential LAP expression in L. monocytogenes serotype 4b strains also affected the scatter patterns of the colonies. The results from this study suggest that BARDOT can be used to screen and enumerate mutant strains separately from the WT based on differential colony scatter patterns. IMPORTANCE: In studies of microbial pathogenesis, virulence-encoding genes are routinely disrupted by deletion or insertion to create mutant strains. Screening of mutant strains is an arduous process involving plating on selective growth media, replica plating, colony hybridization, DNA isolation, and PCR or immunoassays. We applied a noninvasive laser scatterometer to differentiate mutant bacterial colonies from WT colonies based on forward optical scatter patterns. This study demonstrates that BARDOT can be used as a novel, label-free, real-time tool to aid researchers in screening virulence gene-associated mutant colonies during microbial pathogenesis, coinfection, and genetic manipulation studies.

Indexed as

LasersSurface PropertiesBacterial ProteinsBacteriological TechniquesBiophysical PhenomenaListeria monocytogenesMembrane ProteinsVirulence FactorsBacterial ProteinsMembrane ProteinsVirulence Factors

Identifiers

PMID26994085
PMCPMC4959231
OpenAlexW2399155719

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.