Evidence map›Paper›PMID 26993327›Full record

ArticlePlant cell reports2016

Genetic composition of interspecific potato somatic hybrids and autofused 4x plants evaluated by DArT and cytoplasmic DNA markers.

Paulina Smyda-Dajmund, Jadwiga Śliwka, Iwona Wasilewicz-Flis, Henryka Jakuczun, Ewa Zimnoch-Guzowska

Open access · hybridAbstract read
In one paragraph

Article in Plant cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Paternity Assignment in White Guinea Yam (Plants (Basel, Switzerland) · 2020
    Article
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  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Paulina Smyda-DajmundPlant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland. p.smyda@ihar.edu.pl.
Jadwiga ŚliwkaPlant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.
Iwona Wasilewicz-FlisPlant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.
Henryka JakuczunPlant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.
Ewa Zimnoch-GuzowskaPlant Breeding and Acclimatization Institute - National Research Institute, Młochów Research Center, Platanowa 19, 05-831, Młochów, Poland.
Plant Breeding and Acclimatization Institute - National Research Institute · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageUsing DArT analysis, we demonstrated that all Solanum × michoacanum (+) S. tuberosum somatic hybrids contained all parental chromosomes. However, from 13.9 to 29.6 % of the markers from both parents were lost in the hybrids. Somatic hybrids are an interesting material for research of nucleus-cytoplasm interaction and sources of new nuclear and cytoplasmic combinations. Analyses of genomes of somatic hybrids are essential for studies on genome compatibility between species, its evolution and are important for their efficient exploitation. Diversity array technology (DArT) permits analysis of the composition of nuclear DNA of somatic hybrids. The nuclear genome compositions of 97 Solanum × michoacanum (+) S. tuberosum [mch (+) tbr] somatic hybrids from five fusion combinations and 11 autofused 4x mch were analyzed for the first time based on DArT markers. Out of 5358 DArT markers generated in a single assay, greater than 2000 markers were polymorphic between parents, of which more than 1500 have a known chromosomal location on potato genetic or physical map. DArT markers were distributed along the entire length of 12 chromosomes. We noticed elimination of markers of wild and tbr fusion components. The nuclear genome of individual somatic hybrids was diversified. Mch is a source of resistance to Phytophthora infestans. From 97 mch (+) tbr somatic hybrids, two hybrids and all 11 autofused 4x mch were resistant to P. infestans. The analysis of the structure of particular hybrids' chromosomes indicated the presence of markers from both parental genomes as well as missing markers spread along the full length of the chromosome. Markers specific to chloroplast DNA and mitochondrial DNA were used for analysis of changes within the organellar genomes of somatic hybrids. Random and non-random segregations of organellar DNA were noted.

Indexed as

Disease ResistanceDNA, ChloroplastDNA, MitochondrialDNA, PlantGenetic MarkersHybridization, GeneticMultiplex Polymerase Chain ReactionOligonucleotide Array Sequence AnalysisSolanum tuberosumDNA, ChloroplastDNA, MitochondrialDNA, PlantGenetic MarkersDiversity array technologyNuclear genomeProtoplast fusionSolanum × michoacanum; Solanum tuberosum

Identifiers

PMID26993327
PMCPMC4869754
OpenAlexW2299912406

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.