Evidence map›Paper›PMID 26992325›Full record

ArticleMolecular genetics and metabolism2016

Functional cellular analyses reveal energy metabolism defect and mitochondrial DNA depletion in a case of mitochondrial aconitase deficiency.

Roa Sadat, Emanuele Barca, Ruchi Masand, Taraka R Donti, Ali Naini, Darryl C De Vivo, Salvatore DiMauro, Neil A Hanchard, Brett H Graham

Open access · greenAbstract readCase Reports
In one paragraph

Article in Molecular genetics and metabolism, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
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  11. Superoxide Anion Chemistry-Its Role at the Core of the Innate Immunity.International journal of molecular sciences · 2023
    Review
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  19. DominantBrain communications · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Roa SadatUSDA/ARS/Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, USA.
Emanuele BarcaDepartment of Neuroscience, University of Messina, Messina, Italy; Houston Merritt Center, Columbia University Medical Center, New York, NY, USA.
Ruchi MasandDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Taraka R DontiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Ali NainiHouston Merritt Center, Columbia University Medical Center, New York, NY, USA.
Darryl C De VivoPediatric Neurology, Columbia University Medical Center, New York, NY, USA.
Salvatore DiMauroHouston Merritt Center, Columbia University Medical Center, New York, NY, USA.
Neil A HanchardUSDA/ARS/Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Brett H GrahamDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. Electronic address: bgraham@bcm.edu.
Baylor College of Medicine · USColumbia University Irving Medical Center · USChildren's Nutrition Research Center at Baylor College of Medicine · USUniversity of Messina · IT

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
Virology CoreP30AI036211 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BUTEL, JANET S · 1994 to 2015
$21.7M
Tech-CoreP01HD080642 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI QUINZII, CATARINA M. · 2014 to 2018
$7.8M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
Succinyl-COA Synthetase Deficiency: A Model to Study Mitochondrial DNA (MTDNA) DeR01GM098387 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI GRAHAM, BRETT HARRISON · 2012 to 2016
$1.5M
Using cell and fly models to understand gene function in undiagnosed diseasesR21GM110190 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI GRAHAM, BRETT HARRISON · 2014 to 2015
$470k
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
Doris Duke Charitable Foundation 2013096NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NIAID NIH HHS P30 AI036211NICHD NIH HHS 1U54HD083092NICHD NIH HHS P01 HD080642NICHD NIH HHS U54 HD083092NIGMS NIH HHS R01 GM098387NIGMS NIH HHS R01GM098387NIGMS NIH HHS R21 GM110190NIGMS NIH HHS R21GM110190
6 · The paper itself

Abstract

Defects in the tricarboxylic acid cycle (TCA) are associated with a spectrum of neurological phenotypes that are often difficult to diagnose and manage. Whole-exome sequencing (WES) led to a rapid expansion of diagnostic capabilities in such disorders and facilitated a better understanding of disease pathogenesis, although functional characterization remains a bottleneck to the interpretation of potential pathological variants. We report a 2-year-old boy of Afro-Caribbean ancestry, who presented with neuromuscular symptoms without significant abnormalities on routine diagnostic evaluation. WES revealed compound heterozygous missense variants of uncertain significance in mitochondrial aconitase (ACO2), which encodes the TCA enzyme ACO2. Pathogenic variants in ACO2 have been described in a handful of families as the cause of infantile cerebellar-retinal degeneration syndrome. Using biochemical and cellular assays in patient fibroblasts, we found that ACO2 expression was quantitatively normal, but ACO2 enzyme activity was <20% of that observed in control cells. We also observed a deficiency in cellular respiration and, for the first time, demonstrate evidence of mitochondrial DNA depletion and altered expression of some TCA components and electron transport chain subunits. The observed cellular defects were completely restored with ACO2 gene rescue. Our findings demonstrate the pathogenicity of two VUS in ACO2, provide novel mechanistic insights to TCA disturbances in ACO2 deficiency, and implicate mitochondrial DNA depletion in the pathogenesis of this recently described disorder.

Indexed as

Mutation, MissenseAconitate HydrataseChild, PreschoolCitric Acid CycleDNA, MitochondrialExomeGene Expression RegulationHigh-Throughput Nucleotide SequencingHumansMaleMetabolism, Inborn ErrorsNeuromuscular DiseasesACO2 protein, humanAconitate HydrataseDNA, MitochondrialMitochondrial aconitase deficiencymtDNA depletionNeurodegenerative diseaseTCA cycleWhole exome sequencing

Identifiers

PMID26992325
PMCPMC4833660
OpenAlexW2294888177

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.