Evidence map›Paper›PMID 26991476›Full record

ArticleAngewandte Chemie (International ed. in English)2016

Facile Recoding of Selenocysteine in Nature.

Takahito Mukai, Markus Englert, H James Tripp, Corwin Miller, Natalia N Ivanova, Edward M Rubin, Nikos C Kyrpides, Dieter Söll

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Tuning tRNAs for improved translation.Frontiers in genetics · 2024
    Review
  6. Biosynthesis, Engineering, and Delivery of Selenoproteins.International journal of molecular sciences · 2023
    Review
  7. Recoding UAG to selenocysteine inRNA (New York, N.Y.) · 2023
    Article
  8. Review
  9. Article
  10. Bioinformatic Prediction of an tRNAInternational journal of molecular sciences · 2021
    Article
  11. Article
  12. Article
  13. Rational Design of Aptamer-Tagged tRNAs.International journal of molecular sciences · 2020
    Article
  14. Bioinformatics of Selenoproteins.Antioxidants & redox signaling · 2020
    Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Takahito MukaiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA.
Markus EnglertDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA.
H James TrippDepartment of Energy Joint Genome Institute (DOE JGI), Walnut Creek, CA, 94598, USA.
Corwin MillerDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA.
Natalia N IvanovaDepartment of Energy Joint Genome Institute (DOE JGI), Walnut Creek, CA, 94598, USA.
Edward M RubinDepartment of Energy Joint Genome Institute (DOE JGI), Walnut Creek, CA, 94598, USA.
Nikos C KyrpidesDepartment of Energy Joint Genome Institute (DOE JGI), Walnut Creek, CA, 94598, USA.
Dieter SöllDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA. dieter.soll@yale.edu.
Joint Genome Institute · USYale University · US

Funding

TRANSFER RNAR01GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 1985 to 2016
$21.3M
TRANSFER RNAR37GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER G · 1991 to 2000
$786k
NIGMS NIH HHS GM022854NIGMS NIH HHS R01 GM022854NIGMS NIH HHS R37 GM022854
6 · The paper itself

Abstract

Selenocysteine (Sec or U) is encoded by UGA, a stop codon reassigned by a Sec-specific elongation factor and a distinctive RNA structure. To discover possible code variations in extant organisms we analyzed 6.4 trillion base pairs of metagenomic sequences and 24 903 microbial genomes for tRNA(Sec) species. As expected, UGA is the predominant Sec codon in use. We also found tRNA(Sec) species that recognize the stop codons UAG and UAA, and ten sense codons. Selenoprotein synthesis programmed by UAG in Geodermatophilus and Blastococcus, and by the Cys codon UGU in Aeromonas salmonicida was confirmed by metabolic labeling with (75) Se or mass spectrometry. Other tRNA(Sec) species with different anticodons enabled E. coli to synthesize active formate dehydrogenase H, a selenoenzyme. This illustrates the ease by which the genetic code may evolve new coding schemes, possibly aiding organisms to adapt to changing environments, and show the genetic code is much more flexible than previously thought.

Indexed as

Genome, BacterialBacteriaBase SequenceCodon, TerminatorEvolution, MolecularGenetic CodeMetagenomeSelenocysteineCodon, TerminatorSelenocysteinegenetic codemetagenomeselenocysteinesense codon recodingsynthetic biology

Identifiers

PMID26991476
PMCPMC4833512
OpenAlexW2300560013

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.