Evidence map›Paper›PMID 26991001›Full record

ArticleThe FEBS journal2016

Structural studies of neuropilin-2 reveal a zinc ion binding site remote from the vascular endothelial growth factor binding pocket.

Yi-Chun Isabella Tsai, Constantina Fotinou, Rohini Rana, Tamas Yelland, Paul Frankel, Ian Zachary, Snezana Djordjevic

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Ionizable lipid nanoparticles for RAS protease delivery to inhibit cancer cell proliferation.Journal of controlled release : official journal of the Controlled Release Society · 2024
    Article
  4. Article
  5. Article
  6. Neuropilin-1, a myeloid cell-specific protein, is an inhibitor of HIV-1 infectivity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Neuropilins: C-end rule peptides and their association with nociception and COVID-19.Computational and structural biotechnology journal · 2021
    Review
  8. Emerging Roles for Neuropilin-2 in Cardiovascular Disease.International journal of molecular sciences · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yi-Chun Isabella TsaiInstitute of Structural and Molecular Biology, University College London, London, UK.
Constantina FotinouMagnus Life Science, University College London, London, UK.
Rohini RanaMagnus Life Science, University College London, London, UK.
Tamas YellandInstitute of Structural and Molecular Biology, University College London, London, UK.
Paul FrankelCentre for Cardiovascular Biology & Medicine, BHF Laboratories at University College London, London, UK.
Ian ZacharyCentre for Cardiovascular Biology & Medicine, BHF Laboratories at University College London, London, UK.
Snezana DjordjevicInstitute of Structural and Molecular Biology, University College London, London, UK.
University College London · GBCarolus Magnus University · BEInstitute of Structural and Molecular Biology · GB

Funding

British Heart Foundation PG/10/52/28448British Heart Foundation RG/06/003/21131British Heart Foundation RG/11/11/29050
6 · The paper itself

Abstract

Neuropilin-2 is a transmembrane receptor involved in lymphangiogenesis and neuronal development. In adults, neuropilin-2 and its homologous protein neuropilin-1 have been implicated in cancers and infection. Molecular determinants of the ligand selectivity of neuropilins are poorly understood. We have identified and structurally characterized a zinc ion binding site on human neuropilin-2. The neuropilin-2-specific zinc ion binding site is located near the interface between domains b1 and b2 in the ectopic region of the protein, remote from the neuropilin binding site for its physiological ligand, i.e. vascular endothelial growth factor. We also present an X-ray crystal structure of the neuropilin-2 b1 domain in a complex with the C-terminal sub-domain of VEGF-A. Zn(2+) binding to neuropilin-2 destabilizes the protein structure but this effect was counteracted by heparin, suggesting that modifications by glycans and zinc in the extracellular matrix may affect functional neuropilin-2 ligand binding and signalling activity.

Indexed as

Amino Acid SequenceBinding SitesCrystallography, X-RayHumansNeuropilin-2Protein ConformationSequence Homology, Amino AcidVascular Endothelial Growth Factor AZincNeuropilin-2Vascular Endothelial Growth Factor AZincneuropilinssignallingvascular endothelial growth factorX-ray crystallographyzinc

Identifiers

PMID26991001
PMCPMC4914954
OpenAlexW2299290190

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.