Evidence map›Paper›PMID 26989779›Full record

ArticleScience advances2016

Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities.

Qi Xu, Michael G Resch, Kara Podkaminer, Shihui Yang, John O Baker, Bryon S Donohoe, Charlotte Wilson, Dawn M Klingeman, Daniel G Olson, Stephen R Decker and 7 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 127 citations in OpenAlex.

  1. Visual exoproteomics ofbioRxiv : the preprint server for biology · 2026
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  2. Deconstruction byLife science alliance · 2026
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  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Carbohydrate Depolymerization by Intricate Cellulosomal Systems.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Frontiers in microbiology · 2022
    Article
  17. Article
  18. Utilization of Monosaccharides byMicroorganisms · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Qi XuBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.; BioEnergy Science Center, Oak Ridge, TN 37831, USA.
Michael G ReschBioEnergy Science Center, Oak Ridge, TN 37831, USA.; National Bioenergy Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.ORCID 0000-0002-8071-5764
Kara PodkaminerBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.; BioEnergy Science Center, Oak Ridge, TN 37831, USA.ORCID 0000-0003-0915-1131
Shihui YangNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.ORCID 0000-0002-9394-9148
John O BakerBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.; BioEnergy Science Center, Oak Ridge, TN 37831, USA.
Bryon S DonohoeBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.; BioEnergy Science Center, Oak Ridge, TN 37831, USA.ORCID 0000-0002-2272-5059
Charlotte WilsonBioEnergy Science Center, Oak Ridge, TN 37831, USA.; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Dawn M KlingemanBioEnergy Science Center, Oak Ridge, TN 37831, USA.; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Daniel G OlsonBioEnergy Science Center, Oak Ridge, TN 37831, USA.; Thayer School of Engineering, Dartmouth College, Hanover, NH 03755, USA.ORCID 0000-0001-5393-6302
Stephen R DeckerBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.; BioEnergy Science Center, Oak Ridge, TN 37831, USA.ORCID 0000-0001-7002-9034
Richard J GiannoneBioEnergy Science Center, Oak Ridge, TN 37831, USA.; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.ORCID 0000-0001-8551-0138
Robert L HettichBioEnergy Science Center, Oak Ridge, TN 37831, USA.; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Steven D BrownBioEnergy Science Center, Oak Ridge, TN 37831, USA.; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Lee R LyndBioEnergy Science Center, Oak Ridge, TN 37831, USA.; Thayer School of Engineering, Dartmouth College, Hanover, NH 03755, USA.
Edward A BayerThe Weizmann Institute of Science, Rehovot 7610001, Israel.
Michael E HimmelBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.; BioEnergy Science Center, Oak Ridge, TN 37831, USA.
Yannick J BombleBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401, USA.; BioEnergy Science Center, Oak Ridge, TN 37831, USA.
National Laboratory of the Rockies · USOak Ridge National Laboratory · USDartmouth College · USWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium thermocellum is the most efficient microorganism for solubilizing lignocellulosic biomass known to date. Its high cellulose digestion capability is attributed to efficient cellulases consisting of both a free-enzyme system and a tethered cellulosomal system wherein carbohydrate active enzymes (CAZymes) are organized by primary and secondary scaffoldin proteins to generate large protein complexes attached to the bacterial cell wall. This study demonstrates that C. thermocellum also uses a type of cellulosomal system not bound to the bacterial cell wall, called the "cell-free" cellulosomal system. The cell-free cellulosome complex can be seen as a "long range cellulosome" because it can diffuse away from the cell and degrade polysaccharide substrates remotely from the bacterial cell. The contribution of these two types of cellulosomal systems in C. thermocellum was elucidated by characterization of mutants with different combinations of scaffoldin gene deletions. The primary scaffoldin, CipA, was found to play the most important role in cellulose degradation by C. thermocellum, whereas the secondary scaffoldins have less important roles. Additionally, the distinct and efficient mode of action of the C. thermocellum exoproteome, wherein the cellulosomes splay or divide biomass particles, changes when either the primary or secondary scaffolds are removed, showing that the intact wild-type cellulosomal system is necessary for this essential mode of action. This new transcriptional and proteomic evidence shows that a functional primary scaffoldin plays a more important role compared to secondary scaffoldins in the proper regulation of CAZyme genes, cellodextrin transport, and other cellular functions.

Indexed as

Acetivibrio thermocellusBacterial ProteinsBiomassCarrier ProteinsCellulaseCellulosomesGene DeletionGenes, BacterialMicroscopy, Electron, TransmissionModels, BiologicalProteomeBacterial ProteinsCarrier ProteinsCellulasecellulose binding protein A, Clostridium cellulovoransProteomebiofuelsbiomassCell biologycellulasescellulosomes

Identifiers

PMID26989779
PMCPMC4788478
OpenAlexW2267068587

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.