ArticleDatabase : the journal of biological databases and curation2016
Wikidata as a semantic framework for the Gene Wiki initiative.
Article in Database : the journal of biological databases and curation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
23 citing papers in PubMed.
- A framework for integrating biomedical knowledge in Wikidata with open biological and biomedical ontologies and MeSH keywords.Heliyon · 2024Article
- Ten quick tips for editing Wikidata.PLoS computational biology · 2023Article
- Using logical constraints to validate statistical information about disease outbreaks in collaborative knowledge graphs: the case of COVID-19 epidemiology in Wikidata.PeerJ. Computer science · 2022Article
- A resource to explore the discovery of rare diseases and their causative genes.Scientific data · 2021Article
- A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses.BMC biology · 2021Article
- Intestinal microbiota alterations by dietary exposure to chemicals from food cooking and processing. Application of data science for risk prediction.Computational and structural biotechnology journal · 2021Review
- Article
- Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network.PLoS computational biology · 2020Article
- Structured reviews for data and knowledge-driven research.Database : the journal of biological databases and curation · 2020Article
- The Immune Epitope Database (IEDB): 2018 update.Nucleic acids research · 2019Article
- Human Disease Ontology 2018 update: classification, content and workflow expansion.Nucleic acids research · 2019Article
- ECO, the Evidence & Conclusion Ontology: community standard for evidence information.Nucleic acids research · 2019Article
- ChlamBase: a curated model organism database for the Chlamydia research community.Database : the journal of biological databases and curation · 2019Article
- Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research.Database : the journal of biological databases and curation · 2019Article
- GeneDB and Wikidata.Wellcome open research · 2019Article
- The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis.Proceedings of the National Academy of Sciences of the United States of America · 2018Article
- The Cellosaurus, a Cell-Line Knowledge Resource.Journal of biomolecular techniques : JBT · 2018Article
- Supporting shared hypothesis testing in the biomedical domain.Journal of biomedical semantics · 2018Article
- Liberating links between datasets using lightweight data publishing: an example using plant names and the taxonomic literature.Biodiversity data journal · 2018Article
- FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.Database : the journal of biological databases and curation · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors.
Funding
Abstract
Open biological data are distributed over many resources making them challenging to integrate, to update and to disseminate quickly. Wikidata is a growing, open community database which can serve this purpose and also provides tight integration with Wikipedia. In order to improve the state of biological data, facilitate data management and dissemination, we imported all human and mouse genes, and all human and mouse proteins into Wikidata. In total, 59,721 human genes and 73,355 mouse genes have been imported from NCBI and 27,306 human proteins and 16,728 mouse proteins have been imported from the Swissprot subset of UniProt. As Wikidata is open and can be edited by anybody, our corpus of imported data serves as the starting point for integration of further data by scientists, the Wikidata community and citizen scientists alike. The first use case for these data is to populate Wikipedia Gene Wiki infoboxes directly from Wikidata with the data integrated above. This enables immediate updates of the Gene Wiki infoboxes as soon as the data in Wikidata are modified. Although Gene Wiki pages are currently only on the English language version of Wikipedia, the multilingual nature of Wikidata allows for usage of the data we imported in all 280 different language Wikipedias. Apart from the Gene Wiki infobox use case, a SPARQL endpoint and exporting functionality to several standard formats (e.g. JSON, XML) enable use of the data by scientists. In summary, we created a fully open and extensible data resource for human and mouse molecular biology and biochemistry data. This resource enriches all the Wikipedias with structured information and serves as a new linking hub for the biological semantic web. Database URL: https://www.wikidata.org/.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.