ArticleDatabase : the journal of biological databases and curation2016
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado.
Article in Database : the journal of biological databases and curation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
9 citing papers in PubMed.
- Building resource-efficient community databases using open-source software.Database : the journal of biological databases and curation · 2025Article
- CuGenDBv2: an updated database for cucurbit genomics.Nucleic acids research · 2023Article
- Article
- Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops.Nucleic acids research · 2019Article
- Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment.Frontiers in plant science · 2019Article
- SpinachBase: a central portal for spinach genomics.Database : the journal of biological databases and curation · 2019Article
- ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data.BMC bioinformatics · 2017Article
- Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases.Database : the journal of biological databases and curation · 2017Article
- MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data.Database : the journal of biological databases and curation · 2017Article
Corrections and comments
- Erratum issued
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Genome Database for Rosaceae (GDR) and CottonGen are comprehensive online data repositories that provide access to integrated genomic, genetic and breeding data through search, visualization and analysis tools for Rosaceae crops and Gossypium (cotton). These online databases use Chado, an open-source, generic and ontology-driven database schema for biological data, as the primary data storage platform. Chado is highly normalized and uses ontologies to indicate the 'types' of data. Therefore, Chado is flexible such that it has been used to house genomic, genetic and breeding data for GDR and CottonGen. These data include whole genome sequence and annotation, transcripts, molecular markers, genetic maps, Quantitative Trait Loci, Mendelian Trait Loci, traits, germplasm, pedigrees, large scale phenotypic and genotypic data, ontologies and publications. We provide information about how to store these types of data in Chado using GDR and CottonGen as examples sites that were converted from an older legacy infrastructure. Database URL: GDR (www.rosaceae.org), CottonGen (www.cottongen.org).
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.