ArticleBMC genomics2016
Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L).
Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 51 citations in OpenAlex.
- Soil and Foliar Applications of Silicon Mitigate Biotic Stress in Cape Gooseberry Plants Caused by Fusarium Vascular Wilt.Biology · 2026Article
- Soil Allies: Exploring the Combined Potential of Folsomia candida and Trichoderma spp. Against Fusarium oxysporum.Environmental microbiology reports · 2025Article
- Studying the microbiome of suppressive soils against vascular wilt, caused by Fusarium oxysporum in cape gooseberry (Physalis peruviana).Environmental microbiology reports · 2023Article
- Mixtures of Biological Control Agents and Organic Additives Improve Physiological Behavior in Cape Gooseberry Plants under Vascular Wilt Disease.Plants (Basel, Switzerland) · 2021Article
- A Compendium of the Most Promising Synthesized Organic Compounds against SeveralMolecules (Basel, Switzerland) · 2021Review
- Combining transcriptome analysis and GWAS for identification and validation of marker genes in thePeerJ · 2021Article
- Physiological Responses to the Foliar Application of Synthetic Resistance Elicitors in Cape Gooseberry Seedlings Infected withPlants (Basel, Switzerland) · 2020Article
- Article
- Screening of DifferentFrontiers in plant science · 2020Article
- Putative Novel Effector Genes Revealed by the Genomic Analysis of the Phytopathogenic FungusFrontiers in microbiology · 2020Article
- Physalis peruviana L. inhibits ovalbumin‑induced airway inflammation by attenuating the activation of NF‑κB and inflammatory molecules.International journal of molecular medicine · 2019Article
- Evidence for horizontal gene transfer and separation of effector recognition from effector function revealed by analysis of effector genes shared between cape gooseberry- and tomato-infecting formae speciales of Fusarium oxysporum.Molecular plant pathology · 2018Article
- Ancestry informative alleles captured with reduced representation library sequencing in Theobroma cacao.PloS one · 2018Article
- Association Study Reveals Novel Genes Related to Yield and Quality of Fruit in Cape Gooseberry (Frontiers in plant science · 2018Article
- Workflow and web application for annotating NCBI BioProject transcriptome data.Database : the journal of biological databases and curation · 2017Article
Corrections and comments
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Authors and funding
6 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundVascular wilt caused by Fusarium oxysporum is the most important disease in cape gooseberry (Physalis peruviana L.) in Colombia. The development of resistant cultivars is considered one of the most cost-effective means to reduce the impact of this disease. In order to do so, it is necessary to provide breeders with molecular markers and promising germplasm for introgression of different resistance loci as part of breeding schemes. Here we described an association mapping study in cape gooseberry with the goal to: (i) select promising materials for use in plant breeding and (ii) identify SNPs associated with the cape gooseberry resistance response to the F. oxysporum pathogen under greenhouse conditions, as potential markers for cape gooseberry breeding.
resultsWe found a total of 21 accessions with different resistance responses within a diversity panel of 100 cape gooseberry accessions. A total of 60,663 SNPs were also identified within the same panel by means of GBS (Genotyping By Sequencing). Model-based population structure and neighbor-joining analyses showed three populations comprising the cape gooseberry panel. After correction for population structure and kinship, we identified SNPs markers associated with the resistance response against F. oxysporum. The identification of markers was based on common tags using the reference genomes of tomato and potato as well as the root/stem transcriptome of cape gooseberry. By comparing their location with the tomato genome, 16 SNPs were found in genes involved in defense/resistance response to pathogens, likewise when compared with the genome of potato, 12 markers were related.
conclusionsThe work presented herein provides the first association mapping study in cape gooseberry showing both the identification of promising accessions with resistance response phenotypes and the identification of a set of SNP markers mapped to defense/resistance response genes of reference genomes. Thus, the work also provides new knowledge on candidate genes involved in the P. peruviana - F. oxysporum pathosystem as a foundation for further validation in marker-assisted selection. The results have important implications for conservation and breeding strategies in cape gooseberry.
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