ArticlePloS one2016
Molecular Variability and Distribution of Sugarcane Mosaic Virus in Shanxi, China.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Article
- Genetic diversity and molecular evolution of sugarcane mosaic virus, comparing whole genome and coat protein sequence phylogenies.Archives of virology · 2022Article
- Induction of resistance to sugarcane mosaic virus by RNA interference targeting coat protein gene silencing in transgenic sugarcane.Molecular biology reports · 2021Article
- Development and Evaluation of Stable Sugarcane Mosaic Virus Mild Mutants for Cross-Protection Against Infection by Severe Strain.Frontiers in plant science · 2021Article
- Occurrence, genetic diversity, and recombination of maize lethal necrosis disease-causing viruses in Kenya.Virus research · 2020Article
- A Spontaneous Complementary Mutation Restores the RNA Silencing Suppression Activity of HC-Pro and the Virulence of Sugarcane Mosaic Virus.Frontiers in plant science · 2020Article
- Metagenomic Analysis of Plant Viruses Associated With Papaya Ringspot Disease inFrontiers in microbiology · 2020Article
- Extensive recombination challenges the utility of Sugarcane mosaic virus phylogeny and strain typing.Scientific reports · 2019Article
- Maize lethal necrosis and the molecular basis of variability in concentrations of the causal viruses in co-infected maize plant.Journal of general and molecular virology · 2019Review
- Occurrence and Evolutionary Analysis of Coat Protein Gene Sequences of Iranian Isolates ofThe plant pathology journal · 2017Article
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Authors and funding
7 authors.
Funding
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Abstract
backgroundSugarcane mosaic virus (SCMV) is responsible for large-scale economic losses in the global production of sugarcane, maize, sorghum, and some other graminaceous species. To understand the evolutionary mechanism of SCMV populations, this virus was studied in Shanxi, China. A total of 86 maize leaf samples (41 samples in 2012 and 45 samples in 2013) were collected from 4 regions of Shanxi.
resultsDouble-antibody sandwich (DAS)-ELISA and RT-PCR showed 59 samples (30 samples in 2012 and 29 samples in 2013) to be positive for SCMV, from which 10 new isolates of SCMV were isolated and sequenced. The complete genomes of these isolates are 9610 nt long, including the 5' and 3' non-coding regions, and encode a 3063-amino acid polyprotein. Phylogenetic analyses revealed that 24 SCMV isolates could be divided on the basis of the whole genome into 2 divergent evolutionary groups, which were associated with the host species. Among the populations, 15 potential recombination events were identified. The selection pressure on the genes of these SCMV isolates was also calculated. The results confirmed that all the genes were under negative selection.
conclusionsNegative selection and recombination appear to be important evolutionary factors shaping the genetic structure of these SCMV isolates. SCMV is distributed widely in China and exists as numerous strains with distinct genetic diversity. Our findings will provide a foundation for evaluating the epidemiological characteristics of SCMV in China and will be useful in designing long-term, sustainable management strategies for SCMV.
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