Evidence map›Paper›PMID 26986867›Full record

ArticlePloS one2016

Exploring the Mechanism Responsible for Cellulase Thermostability by Structure-Guided Recombination.

Chia-Jung Chang, Cheng-Chung Lee, Yueh-Te Chan, Devin L Trudeau, Mei-Huey Wu, Chih-Hsuan Tsai, Su-May Yu, Tuan-Hua David Ho, Andrew H-J Wang, Chwan-Deng Hsiao and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 49 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Chia-Jung ChangInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan, ROC.
Cheng-Chung LeeInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Yueh-Te ChanInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Devin L TrudeauDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
Mei-Huey WuInstitute of Biotechnology, National Cheng Kung University, Tainan, Taiwan, ROC.
Chih-Hsuan TsaiInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan, ROC.
Su-May YuInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan, ROC.
Tuan-Hua David HoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan, ROC.
Andrew H-J WangInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan, ROC.
Chwan-Deng HsiaoInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan, ROC.
Frances H ArnoldDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
Yu-Chan ChaoInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan, ROC.
Institute of Molecular Biology, Academia Sinica · TWAcademia Sinica · TWCalifornia Institute of Technology · USInstitute of Biological Chemistry, Academia Sinica · TWInstitute of Plant and Microbial Biology, Academia Sinica · TWNational Chung Hsing University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellulases from Bacillus and Geobacillus bacteria are potentially useful in the biofuel and animal feed industries. One of the unique characteristics of these enzymes is that they are usually quite thermostable. We previously identified a cellulase, GsCelA, from thermophilic Geobacillus sp. 70PC53, which is much more thermostable than its Bacillus homolog, BsCel5A. Thus, these two cellulases provide a pair of structures ideal for investigating the mechanism regarding how these cellulases can retain activity at high temperature. In the present study, we applied the SCHEMA non-contiguous recombination algorithm as a novel tool, which assigns protein sequences into blocks for domain swapping in a way that lessens structural disruption, to generate a set of chimeric proteins derived from the recombination of GsCelA and BsCel5A. Analyzing the activity and thermostability of this designed library set, which requires only a limited number of chimeras by SCHEMA calculations, revealed that one of the blocks may contribute to the higher thermostability of GsCelA. When tested against swollen Avicel, the highly thermostable chimeric cellulase C10 containing this block showed significantly higher activity (22%-43%) and higher thermostability compared to the parental enzymes. With further structural determinations and mutagenesis analyses, a 310 helix was identified as being responsible for the improved thermostability of this block. Furthermore, in the presence of ionic calcium and crown ether (CR), the chimeric C10 was found to retain 40% residual activity even after heat treatment at 90°C. Combining crystal structure determinations and structure-guided SCHEMA recombination, we have determined the mechanism responsible for the high thermostability of GsCelA, and generated a novel recombinant enzyme with significantly higher activity.

Indexed as

Amino Acid SequenceAnimalsBacillusCellulaseCrown EthersEnzyme StabilityGeobacillusHot TemperatureModels, MolecularMolecular Sequence DataMutagenesisProtein ConformationSequence AlignmentCellulaseCrown Ethers

Identifiers

PMID26986867
PMCPMC4795783
OpenAlexW2311444993

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.