Evidence map›Paper›PMID 26986695›Full record

ArticleAutophagy2016

Activation of the EIF2AK4-EIF2A/eIF2α-ATF4 pathway triggers autophagy response to Crohn disease-associated adherent-invasive Escherichia coli infection.

Alexis Bretin, Jessica Carrière, Guillaume Dalmasso, Agnès Bergougnoux, Wafa B'chir, Anne-Catherine Maurin, Stefan Müller, Frank Seibold, Nicolas Barnich, Alain Bruhat and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Autophagy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 70 citations in OpenAlex.

  1. Infection and immunity · 2026
    Article
  2. Article
  3. bioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. EnterohemorrhagicPathogens (Basel, Switzerland) · 2025
    Article
  8. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  9. Article
  10. Insulin receptor orchestrates kidney antibacterial defenses.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Crohn's disease: Why the ileum?World journal of gastroenterology · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Reciprocal interactions between gut microbiota and autophagy.World journal of gastroenterology · 2021
    Review
  19. Review
  20. Colibactin-ProducingCancers · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Alexis Bretina University of Clermont Auvergne, M2iSH, UMR 1071 INSERM/University of Auvergne , Clermont-Ferrand , France.
Jessica Carrièrea University of Clermont Auvergne, M2iSH, UMR 1071 INSERM/University of Auvergne , Clermont-Ferrand , France.
Guillaume Dalmassoa University of Clermont Auvergne, M2iSH, UMR 1071 INSERM/University of Auvergne , Clermont-Ferrand , France.
Agnès Bergougnouxa University of Clermont Auvergne, M2iSH, UMR 1071 INSERM/University of Auvergne , Clermont-Ferrand , France.
Wafa B'chirc University of Clermont Auvergne, UMR 1019 INRA , University of Auvergne , Saint Genès Champanelle, France.
Anne-Catherine Maurinc University of Clermont Auvergne, UMR 1019 INRA , University of Auvergne , Saint Genès Champanelle, France.
Stefan Müllerd Department of Clinical Research , Division of Gastroenterology and Cytometry Laboratory, University of Bern , Bern , Switzerland.
Frank Seibolde Department of Gastroenterology , Spital Tiefenau , Bern , Switzerland.
Nicolas Barnicha University of Clermont Auvergne, M2iSH, UMR 1071 INSERM/University of Auvergne , Clermont-Ferrand , France.
Alain Bruhatc University of Clermont Auvergne, UMR 1019 INRA , University of Auvergne , Saint Genès Champanelle, France.
Arlette Darfeuille-Michauda University of Clermont Auvergne, M2iSH, UMR 1071 INSERM/University of Auvergne , Clermont-Ferrand , France.
Hang Thi Thu Nguyena University of Clermont Auvergne, M2iSH, UMR 1071 INSERM/University of Auvergne , Clermont-Ferrand , France.
Université Clermont Auvergne · FRInserm · FRMicrobe, Intestine, Inflammation and Host Susceptibility · FRSpital Thurgau (Switzerland) · CHUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The intestinal mucosa of Crohn disease (CD) patients is abnormally colonized by adherent-invasive E. coli (AIEC). Upon AIEC infection, autophagy is induced in host cells to restrain bacterial intracellular replication. The underlying mechanism, however, remains unknown. Here, we investigated the role of the EIF2AK4-EIF2A/eIF2α-ATF4 pathway in the autophagic response to AIEC infection. We showed that infection of human intestinal epithelial T84 cells with the AIEC reference strain LF82 activated the EIF2AK4-EIF2A-ATF4 pathway, as evidenced by increased phospho-EIF2AK4, phospho-EIF2A and ATF4 levels. EIF2AK4 depletion inhibited autophagy activation in response to LF82 infection, leading to increased LF82 intracellular replication and elevated pro-inflammatory cytokine production. Mechanistically, EIF2AK4 depletion suppressed the LF82-induced ATF4 binding to promoters of several autophagy genes including MAP1LC3B, BECN1, SQSTM1, ATG3 and ATG7, and this subsequently inhibited transcription of these genes. LF82 infection of wild-type (WT), but not eif2ak4(-/-), mice activated the EIF2AK4-EIF2A-ATF4 pathway, inducing autophagy gene transcription and autophagy response in enterocytes. Consequently, eif2ak4(-/-) mice exhibited increased intestinal colonization by LF82 bacteria and aggravated inflammation compared to WT mice. Activation of the EIF2AK4-EIF2A-ATF4 pathway was observed in ileal biopsies from patients with noninflamed CD, and this was suppressed in inflamed CD, suggesting that a defect in the activation of this pathway could be one of the mechanisms contributing to active disease. In conclusion, we show that activation of the EIF2AK4-EIF2A-ATF4 pathway upon AIEC infection serves as a host defense mechanism to induce functional autophagy to control AIEC intracellular replication.

Indexed as

Signal TransductionActivating Transcription Factor 4AdolescentAdultAutophagyCrohn DiseaseEscherichia coli InfectionsEukaryotic Initiation Factor-2FemaleHumansIntestinal MucosaIntestinesMaleProtein Serine-Threonine KinasesYoung AdultActivating Transcription Factor 4ATF4 protein, humanEIF2AK4 protein, humanEukaryotic Initiation Factor-2Protein Serine-Threonine KinasesAIEC infectionautophagyautophagy gene transcriptionCrohn diseaseEIF2AK4

Identifiers

PMID26986695
PMCPMC4854551
OpenAlexW2331533049

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.