Evidence map›Paper›PMID 26985359›Full record

ArticleMolecular autism2016

Genes with high penetrance for syndromic and non-syndromic autism typically function within the nucleus and regulate gene expression.

Emily L Casanova, Julia L Sharp, Hrishikesh Chakraborty, Nahid Sultana Sumi, Manuel F Casanova

Open access · goldAbstract read
In one paragraph

Article in Molecular autism, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
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  8. Review
  9. Article
  10. History of the Task Force for the Korean Clinical Guidelines of the Developmental Disorders.Journal of the Korean Academy of Child and Adolescent Psychiatry · 2024
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Chromatin Remodeling in the Brain-aInternational journal of molecular sciences · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Autism risk genes are evolutionarily ancient and maintain a unique feature landscape that echoes their function.Autism research : official journal of the International Society for Autism Research · 2019
    Article
  20. Genetic Causes and Modifiers of Autism Spectrum Disorder.Frontiers in cellular neuroscience · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Emily L CasanovaDepartment of Biomedical Sciences, University of South Carolina, South Carolina, USA ; Department of Pediatrics, Greenville Health System, Patewood Medical Campus, 200A Patewood Dr, Greenville, SC 29615 USA.ORCID 0000-0001-5129-6698
Julia L SharpDepartment of Mathematical Sciences, Clemson University, Clemson, USA.
Hrishikesh ChakrabortyDepartment of Biostatistics and Epidemiology, University of South Carolina, South Carolina, USA.
Nahid Sultana SumiDepartment of Biostatistics and Epidemiology, University of South Carolina, South Carolina, USA.
Manuel F CasanovaDepartment of Biomedical Sciences, University of South Carolina, South Carolina, USA ; Department of Pediatrics, Greenville Health System, Patewood Medical Campus, 200A Patewood Dr, Greenville, SC 29615 USA.
Prisma Health · USUniversity of South Carolina · USClemson University · US

Funding

Gross morphological correlates to the minicolumnopathy of autismR01HD065279 · NICHD · UNIVERSITY OF LOUISVILLE · PI CASANOVA, MANUEL F · 2009 to 2010
$547k
NICHD NIH HHS R01 HD065279NICHD NIH HHS R01 HD-65279
6 · The paper itself

Abstract

backgroundIntellectual disability (ID), autism, and epilepsy share frequent yet variable comorbidities with one another. In order to better understand potential genetic divergence underlying this variable risk, we studied genes responsible for monogenic IDs, grouped according to their autism and epilepsy comorbidities.

methodsUtilizing 465 different forms of ID with known molecular origins, we accessed available genetic databases in conjunction with gene ontology (GO) to determine whether the genetics underlying ID diverge according to its comorbidities with autism and epilepsy and if genes highly penetrant for autism or epilepsy share distinctive features that set them apart from genes that confer comparatively variable or no apparent risk.

resultsThe genetics of ID with autism are relatively enriched in terms associated with nervous system-specific processes and structural morphogenesis. In contrast, we find that ID with highly comorbid epilepsy (HCE) is modestly associated with lipid metabolic processes while ID without autism or epilepsy comorbidity (ID only) is enriched at the Golgi membrane. Highly comorbid autism (HCA) genes, on the other hand, are strongly enriched within the nucleus, are typically involved in regulation of gene expression, and, along with IDs with more variable autism, share strong ties with a core protein-protein interaction (PPI) network integral to basic patterning of the CNS.

conclusionsAccording to GO terminology, autism-related gene products are integral to neural development. While it is difficult to draw firm conclusions regarding IDs unassociated with autism, it is clear that the majority of HCA genes are tightly linked with general dysregulation of gene expression, suggesting that disturbances to the chronology of neural maturation and patterning may be key in conferring susceptibility to autism spectrum conditions.

Indexed as

Gene Expression RegulationGene OntologyGenetic Association StudiesPenetranceAutism Spectrum DisorderAutistic DisorderBody PatterningCell NucleusChromatin Assembly and DisassemblyComorbidityDatabases, GeneticEpigenomicsEpilepsyHumansIntellectual DisabilityNerve Tissue ProteinsNerve Tissue ProteinsNuclear ProteinsBody patterningChromatin assembly and disassemblyEpigenomicsEpilepsyMental retardationRegulation of gene expression

Identifiers

PMID26985359
PMCPMC4793536
OpenAlexW2302516981

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.