Evidence map›Paper›PMID 26984528›Full record

ArticleNucleic acids research2016

Suppression of gyrase-mediated resistance by C7 aryl fluoroquinolones.

Muhammad Malik, Arkady Mustaev, Heidi A Schwanz, Gan Luan, Nirali Shah, Lisa M Oppegard, Ernane C de Souza, Hiroshi Hiasa, Xilin Zhao, Robert J Kerns and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Fluoroquinolones as imaging agents for bacterial infection.Dalton transactions (Cambridge, England : 2003) · 2017
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Muhammad MalikPublic Heath Research Institute, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA.
Arkady MustaevPublic Heath Research Institute, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA.
Heidi A SchwanzUniversity of Iowa, Division of Medicinal & Natural Products Chemistry, College of Pharmacy, Iowa City, IA 52246, USA.
Gan LuanPublic Heath Research Institute, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA.
Nirali ShahPublic Heath Research Institute, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA.
Lisa M OppegardDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.
Ernane C de SouzaUniversity of Iowa, Division of Medicinal & Natural Products Chemistry, College of Pharmacy, Iowa City, IA 52246, USA.
Hiroshi HiasaDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.
Xilin ZhaoPublic Heath Research Institute, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA Department of Microbiology, Biochemistry & Molecular Genetics, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, School of Public Health, Xiamen University, South Xiang-An Road, Xiang-An District, Xiamen, Fujian Province 361102, China.
Robert J KernsUniversity of Iowa, Division of Medicinal & Natural Products Chemistry, College of Pharmacy, Iowa City, IA 52246, USA.
Karl DrlicaPublic Heath Research Institute, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA Department of Microbiology, Biochemistry & Molecular Genetics, New Jersey Medical School, Rutgers Biomedical and Health Science, 225 Warren Street, Newark, NJ 07103, USA drlicaka@njms.rutgers.edu.
Rutgers, The State University of New Jersey · USUniversity of Iowa · USUniversity of Minnesota Medical Center · USRutgers HealthXiamen University · CN

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Novel fluoroquinolones for killing dormant Mycobacterium tuberculosisR01AI073491 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI DRLICA, KARL A, KERNS, ROBERT JOHN · 2007 to 2015
$5.1M
PREDOCTORAL TRAINING PROGRAM IN BIOTECHNOLOGYT32GM008365 · NIGMS · UNIVERSITY OF IOWA · PI KERNS, ROBERT JOHN · 1990 to 2021
$3.8M
Antibacterial Agents that Restrict the Emergence of ResistanceR01AI087671 · NIAID · UNIVERSITY OF IOWA · PI KERNS, ROBERT JOHN · 2010 to 2014
$1.9M
BORDETELLA PERTUSSIS TRACHEAL CYTOTOXINF32AI007341 · NIAID · WASHINGTON UNIVERSITY · PI HERWALDT, LOREEN A · 1985 to 1987
–
NIAID NIH HHS AI 07341NIAID NIH HHS AI 87671NIAID NIH HHS R01 AI073491NIAID NIH HHS R01 AI087671NIGMS NIH HHS T32 GM008365NIGMS NIH HHS T32GM008365
6 · The paper itself

Abstract

Fluoroquinolones form drug-topoisomerase-DNA complexes that rapidly block transcription and replication. Crystallographic and biochemical studies show that quinolone binding involves a water/metal-ion bridge between the quinolone C3-C4 keto-acid and amino acids in helix-4 of the target proteins, GyrA (gyrase) and ParC (topoisomerase IV). A recent cross-linking study revealed a second drug-binding mode in which the other end of the quinolone, the C7 ring system, interacts with GyrA. We report that addition of a dinitrophenyl (DNP) moiety to the C7 end of ciprofloxacin (Cip-DNP) reduced protection due to resistance substitutions in Escherichia coli GyrA helix-4, consistent with the existence of a second drug-binding mode not evident in X-ray structures of drug-topoisomerase-DNA complexes. Several other C7 aryl fluoroquinolones behaved in a similar manner with particular GyrA mutants. Treatment of E. coli cultures with Cip-DNP selectively enriched an uncommon variant, GyrA-A119E, a change that may impede binding of the dinitrophenyl group at or near the GyrA-GyrA interface. Collectively the data support the existence of a secondary quinolone-binding mode in which the quinolone C7 ring system interacts with GyrA; the data also identify C7 aryl derivatives as a new way to obtain fluoroquinolones that overcome existing GyrA-mediated quinolone resistance.

Indexed as

Anti-Bacterial AgentsDinitrophenolsDNA GyraseDrug Resistance, BacterialEscherichia coliFluoroquinolonesMutationTopoisomerase II InhibitorsAnti-Bacterial AgentsDinitrophenolsDNA GyraseFluoroquinolonesTopoisomerase II Inhibitors

Identifiers

PMID26984528
PMCPMC4838383
OpenAlexW2322067470

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.