Evidence map›Paper›PMID 26983994›Full record

ArticlePlant physiology2016

Role of SKD1 Regulators LIP5 and IST1-LIKE1 in Endosomal Sorting and Plant Development.

Rafael Andrade Buono, Julio Paez-Valencia, Nathan D Miller, Kaija Goodman, Christoph Spitzer, Edgar P Spalding, Marisa S Otegui

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
14.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 71 citations in OpenAlex.

  1. Review
  2. Post-Golgi Trafficking in Plant Cells.Sub-cellular biochemistry · 2026
    Review
  3. ESCRTs in plant abiotic stresses.Essays in biochemistry · 2025
    Review
  4. Article
  5. Article
  6. Review
  7. Endosomal membrane budding patterns in plants.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. IST1 regulates select recycling pathways.Traffic (Copenhagen, Denmark) · 2024
    Article
  9. Article
  10. Article
  11. Regulation of PIN-FORMED Protein Degradation.International journal of molecular sciences · 2023
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Rafael Andrade BuonoDepartment of Botany (R.A.B., J.P.-V., N.D.M., K.G., C.S., E.P.S., M.S.O.), R.M. Bock Laboratories of Cell and Molecular Biology (R.A.B, J.P.-V., K.G., M.S.O.), and Department of Genetics (M.S.O.), University of Wisconsin-Madison, Madison, Wisconsin 53706.ORCID 0000-0002-6675-3836
Julio Paez-ValenciaDepartment of Botany (R.A.B., J.P.-V., N.D.M., K.G., C.S., E.P.S., M.S.O.), R.M. Bock Laboratories of Cell and Molecular Biology (R.A.B, J.P.-V., K.G., M.S.O.), and Department of Genetics (M.S.O.), University of Wisconsin-Madison, Madison, Wisconsin 53706.
Nathan D MillerDepartment of Botany (R.A.B., J.P.-V., N.D.M., K.G., C.S., E.P.S., M.S.O.), R.M. Bock Laboratories of Cell and Molecular Biology (R.A.B, J.P.-V., K.G., M.S.O.), and Department of Genetics (M.S.O.), University of Wisconsin-Madison, Madison, Wisconsin 53706.
Kaija GoodmanDepartment of Botany (R.A.B., J.P.-V., N.D.M., K.G., C.S., E.P.S., M.S.O.), R.M. Bock Laboratories of Cell and Molecular Biology (R.A.B, J.P.-V., K.G., M.S.O.), and Department of Genetics (M.S.O.), University of Wisconsin-Madison, Madison, Wisconsin 53706.
Christoph SpitzerDepartment of Botany (R.A.B., J.P.-V., N.D.M., K.G., C.S., E.P.S., M.S.O.), R.M. Bock Laboratories of Cell and Molecular Biology (R.A.B, J.P.-V., K.G., M.S.O.), and Department of Genetics (M.S.O.), University of Wisconsin-Madison, Madison, Wisconsin 53706.ORCID 0000-0002-6356-0393
Edgar P SpaldingDepartment of Botany (R.A.B., J.P.-V., N.D.M., K.G., C.S., E.P.S., M.S.O.), R.M. Bock Laboratories of Cell and Molecular Biology (R.A.B, J.P.-V., K.G., M.S.O.), and Department of Genetics (M.S.O.), University of Wisconsin-Madison, Madison, Wisconsin 53706.ORCID 0000-0002-6890-4765
Marisa S OteguiDepartment of Botany (R.A.B., J.P.-V., N.D.M., K.G., C.S., E.P.S., M.S.O.), R.M. Bock Laboratories of Cell and Molecular Biology (R.A.B, J.P.-V., K.G., M.S.O.), and Department of Genetics (M.S.O.), University of Wisconsin-Madison, Madison, Wisconsin 53706 otegui@wisc.edu.ORCID 0000-0003-4699-6950
University of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SKD1 is a core component of the mechanism that degrades plasma membrane proteins via the Endosomal Sorting Complex Required for Transport (ESCRT) pathway. Its ATPase activity and endosomal recruitment are regulated by the ESCRT components LIP5 and IST1. How LIP5 and IST1 affect ESCRT-mediated endosomal trafficking and development in plants is not known. Here we use Arabidopsis mutants to demonstrate that LIP5 controls the constitutive degradation of plasma membrane proteins and the formation of endosomal intraluminal vesicles. Although lip5 mutants were able to polarize the auxin efflux facilitators PIN2 and PIN3, both proteins were mis-sorted to the tonoplast in lip5 root cells. In addition, lip5 root cells over-accumulated PIN2 at the plasma membrane. Consistently with the trafficking defects of PIN proteins, the lip5 roots showed abnormal gravitropism with an enhanced response within the first 4 h after gravistimulation. LIP5 physically interacts with IST1-LIKE1 (ISTL1), a protein predicted to be the Arabidopsis homolog of yeast IST1. However, we found that Arabidopsis contains 12 genes coding for predicted IST1-domain containing proteins (ISTL1-12). Within the ISTL1-6 group, ISTL1 showed the strongest interaction with LIP5, SKD1, and the ESCRT-III-related proteins CHMP1A in yeast two hybrid assays. Through the analysis of single and double mutants, we found that the synthetic interaction of LIP5 with ISTL1, but not with ISTL2, 3, or 6, is essential for normal plant growth, repression of spontaneous cell death, and post-embryonic lethality.

Indexed as

Adenosine TriphosphatasesArabidopsisArabidopsis ProteinsCotyledonDNA, BacterialEndosomal Sorting Complexes Required for TransportGene ExpressionGravitationGravitropismIndoleacetic AcidsMembrane ProteinsMicroscopy, ElectronMutationOxidoreductasesPlant DevelopmentPlant RootsAdenosine TriphosphatasesArabidopsis ProteinsAT5G57090 protein, ArabidopsisCHMP1A protein, ArabidopsisDNA, BacterialEndosomal Sorting Complexes Required for TransportIndoleacetic AcidsMembrane ProteinsOxidoreductasesPIN3 protein, ArabidopsisSKD1 protein, ArabidopsisT-DNAVesicular Transport Proteinszeta-carotene desaturase

Identifiers

PMID26983994
PMCPMC4854716
OpenAlexW2301500880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.