Evidence map›Paper›PMID 26983858›Full record

ArticleParasites & vectors2016

Horizontal transfer of β-carbonic anhydrase genes from prokaryotes to protozoans, insects, and nematodes.

Reza Zolfaghari Emameh, Harlan R Barker, Martti E E Tolvanen, Seppo Parkkila, Vesa P Hytönen

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Biochemical and structural characterisation of a protozoan beta-carbonic anhydrase fromJournal of enzyme inhibition and medicinal chemistry · 2020
    Article
  6. Article
  7. Iranian journal of biotechnology · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Reza Zolfaghari EmamehSchool of Medicine, University of Tampere, Medisiinarinkatu 3, FI-33520, Tampere, Finland. zolfaghari.emameh.reza.x@student.uta.fi.
Harlan R BarkerSchool of Medicine, University of Tampere, Medisiinarinkatu 3, FI-33520, Tampere, Finland.
Martti E E TolvanenDepartment of Information Technology, University of Turku, FI-20520, Turku, Finland.
Seppo ParkkilaSchool of Medicine, University of Tampere, Medisiinarinkatu 3, FI-33520, Tampere, Finland.
Vesa P HytönenBioMediTech, University of Tampere, FI-33520, Tampere, Finland.
Tampere University · FIFimlab (Finland) · FITampere University · FIUniversity of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHorizontal gene transfer (HGT) is a movement of genetic information occurring outside of normal mating activities. It is especially common between prokaryotic endosymbionts and their protozoan, insect, and nematode hosts. Although beta carbonic anhydrase (β-CA) plays a crucial role in metabolic functions of many living organisms, the origin of β-CA genes in eukaryotic species remains unclear.

methodsThis study was conducted using phylogenetics, prediction of subcellular localization, and identification of β-CA, transposase, integrase, and resolvase genes on the MGEs of bacteria. We also structurally analyzed β-CAs from protozoans, insects, and nematodes and their putative prokaryotic common ancestors, by homology modelling.

resultsOur investigations of a number of target genomes revealed that genes coding for transposase, integrase, resolvase, and conjugation complex proteins have been integrated with β-CA gene sequences on mobile genetic elements (MGEs) which have facilitated the mobility of β-CA genes from bacteria to protozoan, insect, and nematode species. The prokaryotic origin of protozoan, insect, and nematode β-CA enzymes is supported by phylogenetic analyses, prediction of subcellular localization, and homology modelling.

conclusionMGEs form a complete set of enzymatic tools, which are relevant to HGT of β-CA gene sequences from prokaryotes to protozoans, insects, and nematodes.

Indexed as

Gene Transfer, HorizontalInterspersed Repetitive SequencesAnimalsBacteriaCarbonic AnhydrasesEukaryotaModels, MolecularSequence HomologyCarbonic AnhydrasesBeta carbonic anhydraseEndosymbiontsEvolutionHorizontal gene transferIntegraseMobile genetic elementsParasitePlasmidResolvaseTransposase

Identifiers

PMID26983858
PMCPMC4793742
OpenAlexW2299762012

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.