Evidence map›Paper›PMID 26982486›Full record

ArticlePLoS genetics2016

Evolution of KaiC-Dependent Timekeepers: A Proto-circadian Timing Mechanism Confers Adaptive Fitness in the Purple Bacterium Rhodopseudomonas palustris.

Peijun Ma, Tetsuya Mori, Chi Zhao, Teresa Thiel, Carl Hirschie Johnson

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 73 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Photomorphogenesis of Myxococcus macrosporus: new insights for light-regulation of cell development.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. The Hypothesis of a "Living Pulse" in Cells.Life (Basel, Switzerland) · 2023
    Article
  12. Review
  13. Circadian entrainment of in vitro reactions, in real time, and around the clock.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Perfecting the Life Clock: The Journey from PTO to TTFL.International journal of molecular sciences · 2023
    Review
  18. Article
  19. Article
  20. Frontiers in physiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Peijun MaDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America.
Tetsuya MoriDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America.
Chi ZhaoDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America.
Teresa ThielDepartment of Biology, University of Missouri-St. Louis, St. Louis, Missouri, United States of America.
Carl Hirschie JohnsonDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America.
Vanderbilt University · USUniversity of Missouri–St. Louis · US

Funding

Circadian Programs in BacteriaR37GM067152 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2015 to 2024
$4.1M
Regulation and Significance of Sustained Circadian OscillationsR01GM107434 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2013 to 2024
$4.0M
Circadian Programs in BacteriaR01GM067152 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2003 to 2014
$3.9M
Experimental Evolution of Circadian OscillatorsR01GM088595 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2009 to 2012
$1.2M
NIGMS NIH HHS R01 GM067152NIGMS NIH HHS R01GM067152NIGMS NIH HHS R01 GM088595NIGMS NIH HHS R01GM088595NIGMS NIH HHS R01 GM107434NIGMS NIH HHS R01GM107434NIGMS NIH HHS R37 GM067152
6 · The paper itself

Abstract

Circadian (daily) rhythms are a fundamental and ubiquitous property of eukaryotic organisms. However, cyanobacteria are the only prokaryotic group for which bona fide circadian properties have been persuasively documented, even though homologs of the cyanobacterial kaiABC central clock genes are distributed widely among Eubacteria and Archaea. We report the purple non-sulfur bacterium Rhodopseudomonas palustris (that harbors homologs of kaiB and kaiC) only poorly sustains rhythmicity in constant conditions-a defining characteristic of circadian rhythms. Moreover, the biochemical characteristics of the Rhodopseudomonas homolog of the KaiC protein in vivo and in vitro are different from those of cyanobacterial KaiC. Nevertheless, R. palustris cells exhibit adaptive kaiC-dependent growth enhancement in 24-h cyclic environments, but not under non-natural constant conditions. Therefore, our data indicate that Rhodopseudomonas does not have a classical circadian rhythm, but a novel timekeeping mechanism that does not sustain itself in constant conditions. These results question the adaptive value of self-sustained oscillatory capability for daily timekeepers and establish new criteria for circadian-like systems that are based on adaptive properties (i.e., fitness enhancement in rhythmic environments), rather than upon observations of persisting rhythms in constant conditions. We propose that the Rhodopseudomonas system is a "proto" circadian timekeeper, as in an ancestral system that is based on KaiC and KaiB proteins and includes some, but not necessarily all, of the canonical properties of circadian clocks. These data indicate reasonable intermediate steps by which bona fide circadian systems evolved in simple organisms.

Indexed as

Evolution, MolecularGenetic FitnessBacterial ProteinsCircadian ClocksCircadian RhythmCircadian Rhythm Signaling Peptides and ProteinsCyanobacteriaGene Expression Regulation, BacterialPhosphorylationRhodopseudomonasBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsKaiC protein, cyanobacteria

Identifiers

PMID26982486
PMCPMC4794148
OpenAlexW2297583838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.