Evidence map›Paper›PMID 26981579›Full record

ArticleEBioMedicine2016

Gene by Environment Investigation of Incident Lung Cancer Risk in African-Americans.

Sean P David, Ange Wang, Kristopher Kapphahn, Haley Hedlin, Manisha Desai, Michael Henderson, Lingyao Yang, Kyle M Walsh, Ann G Schwartz, John K Wiencke and 17 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Single nucleotide variants in lung cancer.Chinese medical journal pulmonary and critical care medicine · 2024
    Review
  3. Review
  4. Article
  5. Article
  6. Oncotarget · 2017
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 15 institutions in 1 country.

Sean P DavidDivision of General Medical Disciplines, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Ange WangStanford Prevention Research Center, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Kristopher KapphahnQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Haley HedlinQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Manisha DesaiQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Michael HendersonStanford Prevention Research Center, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Lingyao YangQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Kyle M WalshDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, United States; Program in Cancer Genetics, Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, United States.
Ann G SchwartzDepartment of Oncology, Karmanos Cancer Institute, Wayne State University, Detroit, MI, United States.
John K WienckeDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, United States.
Margaret R SpitzDan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, United States.
Angela S WenzlaffDepartment of Oncology, Karmanos Cancer Institute, Wayne State University, Detroit, MI, United States.
Margaret R WrenschDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, United States.
Charles B EatonCenter for Primary Care and Prevention, Department of Family Medicine, Warren Alpert Medical School of Brown University, Pawtucket, RI, United States.
Helena FurbergDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, United States.
W Mark BrownDivision of Public Health Sciences, Department of Biostatistical Sciences, Wake Forest University Health Sciences, Winston-Salem, NC, United States.
Benjamin A GoldsteinDepartment of Biostatistics & Bioinformatics, Duke University School of Medicine, Durham, NC, United States.
Themistocles AssimesDivision of Cardiovascular Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Hua TangDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, United States.
Charles L KooperbergDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, United States.
Charles P QuesenberryKaiser Permanente, Division of Research, Oakland, CA 94612, United States.
Hilary TindleDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth, Lebanon, NH, United States.
Manali I PatelDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Christopher I AmosDepartments of Genetics, Geisel School of Medicine at Dartmouth, Hanover, NH, United States; Community and Family Medicine, Geisel School of Medicine at Dartmouth, Hanover, NH, United States.
Andrew W BergenBioRealm, Culver City, CA, United States.
Gary E SwanQuantitative Sciences Unit, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Marcia L StefanickStanford Prevention Research Center, Department of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Stanford University · USWayne State University · USBioRealm (United States) · USBrown University · USChildren's Cancer Center · USDartmouth College · USDuke University · USFred Hutch Cancer Center · USKaiser Permanente · USMemorial Sloan Kettering Cancer Center · USNeurological Surgery · USUCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of California, San Francisco · USVanderbilt University · USWake Forest University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Women's Health Initiative Clinical Coordinating CenterN01WH22110 · WH · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PRENTICE, ROSS L · 2007 to 2010
$22.5M
GENETIC EPIDEMIOLOGY OF MALIGNANT GLIOMAR01CA052689 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WIENCKE, JOHN K., WRENSCH, MARGARET R. · 1991 to 2015
$20.5M
Surveillance, Epidemiology and End Results (SEER) Program - Wayne StateN01PC35145 · NCI · WAYNE STATE UNIVERSITY · PI SCHWARTZ, ANN · 2007 to 2009
$14.6M
Transdisciplinary Research in Cancer of the Lung (TRICL)U19CA148127 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AMOS, CHRISTOPHER I., LE MARCHAND, LOIC · 2010 to 2014
$10.9M
BIOMARKERS OF LUNG CANCER SUSCEPTIBILITY IN MINORITIESR01ES006717 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WIENCKE, JOHN K. · 1994 to 2009
$8.9M
GENETIC EPIDEMIOLOGY OF LUNG CANCERR01CA060691 · NCI · WAYNE STATE UNIVERSITY · PI SCHWARTZ, ANN G. · 1995 to 2009
$6.2M
ECOGENETIC STUDY OF LUNG CANCER IN MINORITIESR01CA055769 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SPITZ, MARGARET R · 1991 to 2008
$5.3M
Extended Treatment for Smoking CessationR01DA017441 · NIDA · STANFORD UNIVERSITY · PI DAVID, SEAN P. · 2003 to 2013
$5.2M
Inflammation Genes and Lung Cancer RiskR01CA127219 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SPITZ, MARGARET R · 2008 to 2013
$3.1M
WOMENS HEALTH INITIATIVE-N01WH22110N01WH022110 · WH · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ROSS, PRENTICE · 1992 to 2006
$1.2M
NCI NIH HHS N01PC35145NCI NIH HHS P30 CA008748NCI NIH HHS P30CA008748NCI NIH HHS P30 CA023108NCI NIH HHS R01CA060691NCI NIH HHS R01CA127219NCI NIH HHS R01CA141716NCI NIH HHS R01CA14176NCI NIH HHS R01CA52689NCI NIH HHS R01CA55769NCI NIH HHS U19CA148127NIDA NIH HHS R01 DA017441NIEHS NIH HHS R01ES06717PHS HHS 24152PHS HHS 32100-2PHS HHS 32105-6PHS HHS 32108-9PHS HHS 32111-13PHS HHS 32115PHS HHS 32118-32119PHS HHS 32122PHS HHS 42107-26PHS HHS 42129-32PHS HHS 44221PHS HHS HHSN261201000028CWHI NIH HHS N01WH22110
6 · The paper itself

Abstract

backgroundGenome-wide association studies have identified polymorphisms linked to both smoking exposure and risk of lung cancer. The degree to which lung cancer risk is driven by increased smoking, genetics, or gene-environment interactions is not well understood.

methodsWe analyzed associations between 28 single nucleotide polymorphisms (SNPs) previously associated with smoking quantity and lung cancer in 7156 African-American females in the Women's Health Initiative (WHI), then analyzed main effects of top nominally significant SNPs and interactions between SNPs, cigarettes per day (CPD) and pack-years for lung cancer in an independent, multi-center case-control study of African-American females and males (1078 lung cancer cases and 822 controls).

findingsNine nominally significant SNPs for CPD in WHI were associated with incident lung cancer (corrected p-values from 0.027 to 6.09 × 10(-5)). CPD was found to be a nominally significant effect modifier between SNP and lung cancer for six SNPs, including CHRNA5 rs2036527[A](betaSNP*CPD = - 0.017, p = 0.0061, corrected p = 0.054), which was associated with CPD in a previous genome-wide meta-analysis of African-Americans.

interpretationThese results suggest that chromosome 15q25.1 variants are robustly associated with CPD and lung cancer in African-Americans and that the allelic dose effect of these polymorphisms on lung cancer risk is most pronounced in lighter smokers.

Indexed as

Gene-Environment InteractionBlack or African AmericanCase-Control StudiesChromosomes, Human, Pair 15FemaleGenes, ModifierHumansLung NeoplasmsMaleNerve Tissue ProteinsPolymorphism, Single NucleotideReceptors, NicotinicSmokingCHRNA5 protein, humanNerve Tissue ProteinsReceptors, NicotinicAfrican-AmericansEnvironmentGeneticsLung Cancerrs2036527Single Nucleotide PolymorphismsSmoking

Identifiers

PMID26981579
PMCPMC4776066
OpenAlexW2234340700

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.