ArticleGenomics data2016
De novo assembly and comparison of the ovarian transcriptomes of the common Chinese cuttlefish (Sepiella japonica) with different gonadal development.
Article in Genomics data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Comparative transcriptomic analysis of the different developmental stages of ovary in the cuttlefish Sepia pharaonis.BMC genomics · 2024Article
- Molecular Characterization, Expression andCurrent protein & peptide science · 2024Article
- Insulin-like Peptide Receptor (ILPR) in the CuttlefishInternational journal of molecular sciences · 2022Article
- Characterization of Insulin-like Peptide (ILP) and Its Potential Role in Ovarian Development of the CuttlefishCurrent issues in molecular biology · 2022Article
- Inhibitory Effect of FMRFamide on NO Production During Immune Defense inFrontiers in immunology · 2022Article
- Transcriptome analysis for identifying possible causes of post-reproductive death of Sepia esculenta based on brain tissue.Genes & genomics · 2019Article
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11 authors.
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Abstract
The common Chinese cuttlefish (Sepiella japonica) has been considered one of the most economically important marine Cephalopod species in East Asia and seed breeding technology has been established for massive aquaculture and stock enhancement. In the present study, we used Illumina HiSeq2000 to sequence, assemble and annotate the transcriptome of the ovary tissues of S. japonica for the first time. A total of 53,116,650 and 53,446,640 reads were obtained from the immature and matured ovaries, respectively (NCBI SRA database SRX1409472 and SRX1409473), and 70,039 contigs (N50 = 1443 bp) were obtained after de novo assembling with Trinity software. Digital gene expression analysis reveals 47,288 contigs show differential expression profile and 793 contigs are highly expressed in the immature ovary, while 38 contigs are highly expressed in the mature ovary with FPKM > 100. We hope that the ovarian transcriptome and those stage-enriched transcripts of S. japonica can provide some insight into the understanding of genome-wide transcriptome profile of cuttlefish gonad tissue and give useful information in cuttlefish gonad development.
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