Evidence map›Paper›PMID 26981369›Full record

ArticleGenomics data2016

Transcriptional profile of immediate response to ionizing radiation exposure.

Eric C Rouchka, Robert M Flight, Brigitte H Fasciotto, Rosendo Estrada, John W Eaton, Phani K Patibandla, Sabine J Waigel, Dazhuo Li, John K Kirtley, Palaniappan Sethu and 1 more

Abstract read
In one paragraph

Article in Genomics data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Eric C RouchkaDepartment of Computer Engineering and Computer Science, University of Louisville, Louisville, KY 40292, United States; Kentucky Biomedical Research Infrastructure Network Bioinformatics Core, University of Louisville, Louisville, KY 40292, United States.
Robert M FlightDepartment of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY 40356, United States.
Brigitte H FasciottoTheElectroOptics Research Institute and Nanotechnology Center, University of Louisville, Louisville, KY 40292, United States.
Rosendo EstradaDepartment of Bioengineering, University of Louisville, Louisville, KY 40292, United States.
John W EatonDepartment of Medicine, University of Louisville, Louisville, KY 40292, United States; Department of Pharmacology and Toxicology, University of Louisville, Louisville, KY 40292, United States; James Graham Brown Cancer Center, University of Louisville, Louisville, KY 40202, United States.
Phani K PatibandlaDivision of Cardiovascular Disease, Department of Medicine, University of Alabama at Birmingham, Birmingham, AL 35294, United States; Department of Biomedical Engineering, University of Alabama at Birmingham, Birmingham, AL 35294, United States.
Sabine J WaigelJames Graham Brown Cancer Center, University of Louisville, Louisville, KY 40202, United States.
Dazhuo LiDepartment of Computer Engineering and Computer Science, University of Louisville, Louisville, KY 40292, United States.
John K KirtleyDepartment of Computer Engineering and Computer Science, University of Louisville, Louisville, KY 40292, United States.
Palaniappan SethuDivision of Cardiovascular Disease, Department of Medicine, University of Alabama at Birmingham, Birmingham, AL 35294, United States; Department of Biomedical Engineering, University of Alabama at Birmingham, Birmingham, AL 35294, United States.
Robert S KeyntonDepartment of Medicine, University of Louisville, Louisville, KY 40292, United States.

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
ZEBRAFISH VISUAL FUNCTION RECOVERY FOLLOWING OPTIC NERVE DAMAGEP20RR016481 · NCRR · UNIVERSITY OF LOUISVILLE · PI BARTON, HAZEL A · 2001 to 2011
$34.8M
NCRR NIH HHS P20 RR016481NIGMS NIH HHS P20 GM103436
6 · The paper itself

Abstract

Astronauts participating in long duration space missions are likely to be exposed to ionizing radiation associated with highly energetic and charged heavy particles. Previously proposed gene biomarkers for radiation exposure include phosphorylated H2A Histone Family, Member X (γH2AX), Tumor Protein 53 (TP53), and Cyclin-Dependent Kinase Inhibitor 1A (CDKN1A). However, transcripts of these genes may not be the most suitable biomarkers for radiation exposure due to a lack of sensitivity or specificity. As part of a larger effort to develop lab-on-a-chip methods for detecting radiation exposure events using blood samples, we designed a dose-course microarray study in order to determine coding and non-coding RNA transcripts undergoing differential expression immediately following radiation exposure. The main goal was to elicit a small set of sensitive and specific radiation exposure biomarkers at low, medium, and high levels of ionizing radiation exposure. Four separate levels of radiation were considered: 0 Gray (Gy) control; 0.3 Gy; 1.5 Gy; and 3.0 Gy with four replicates at each radiation level. This report includes raw gene expression data files from the resulting microarray experiments from all three radiation levels ranging from a lower, typical exposure than an astronaut might see (0.3 Gy) to high, potentially lethal, levels of radiation (3.0 Gy). The data described here is available in NCBI's Gene Expression Omnibus (GEO), accession GSE64375.

Indexed as

AstronautIonizing radiationLong duration space travelRadiation exposure

Identifiers

PMID26981369
PMCPMC4778620

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.