Evidence map›Paper›PMID 26980599›Full record

ArticleCancer immunology research2016

Expression of the MHC Class II Pathway in Triple-Negative Breast Cancer Tumor Cells Is Associated with a Good Prognosis and Infiltrating Lymphocytes.

Andres Forero, Yufeng Li, Dongquan Chen, William E Grizzle, Katherine L Updike, Natalie D Merz, Erinn Downs-Kelly, Todd C Burwell, Christos Vaklavas, Donald J Buchsbaum and 3 more

Abstract read
In one paragraph

Article in Cancer immunology research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed.

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66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Andres ForeroDepartment of Medicine, University of Alabama at Birmingham, Comprehensive Cancer Center, Birmingham, Alabama.
Yufeng LiDepartment of Medicine, University of Alabama at Birmingham, Comprehensive Cancer Center, Birmingham, Alabama.
Dongquan ChenDepartment of Medicine, University of Alabama at Birmingham, Comprehensive Cancer Center, Birmingham, Alabama.
William E GrizzleDepartment of Pathology, University of Alabama at Birmingham, Comprehensive Cancer Center, Birmingham, Alabama.
Katherine L UpdikeDepartment of Oncological Sciences, University of Utah, Huntsman Cancer Institute, Salt Lake City, Utah.
Natalie D MerzDepartment of Oncological Sciences, University of Utah, Huntsman Cancer Institute, Salt Lake City, Utah.
Erinn Downs-KellyDepartment of Pathology, Huntsman Cancer Institute, University of Utah, Salt Lake City, Utah.
Todd C BurwellHudsonAlpha Institute for Biotechnology, Huntsville, Alabama.
Christos VaklavasDepartment of Medicine, University of Alabama at Birmingham, Comprehensive Cancer Center, Birmingham, Alabama.
Donald J BuchsbaumDepartment of Radiation Oncology, University of Alabama at Birmingham, Comprehensive Cancer Center, Birmingham, Alabama.
Richard M MyersHudsonAlpha Institute for Biotechnology, Huntsville, Alabama. Department of Genetics, University of Alabama at Birmingham, Birmingham, Alabama.
Albert F LoBuglioDepartment of Medicine, University of Alabama at Birmingham, Comprehensive Cancer Center, Birmingham, Alabama.
Katherine E VarleyDepartment of Oncological Sciences, University of Utah, Huntsman Cancer Institute, Salt Lake City, Utah.

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
WV INBRE: The Inhibitor of Growth Family Member 4 (ING4) inhibits L-Type Amino Acid Transporter 1 (LAT1) expression to suppress Breast CancerP20GM103434 · NIGMS · MARSHALL UNIVERSITY · PI Stanley M. Hileman · 2012 to 2026
$61.1M
TRAINING AND CAREER DEVELOPMENTU54CA118948 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI UPENDER MANNE · 2005 to 2026
$26.6M
UAB Rexinoids for Breast Cancer PreventionP50CA089019 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BLAND, KIRBY I. · 2000 to 2011
$26.0M
Research Education CoreU54CA118623 · NCI · TUSKEGEE UNIVERSITY · PI Vivian L Carter, TIMOTHY TURNER · 2005 to 2026
$20.2M
INFRASTRUCTURE IIG12MD007585 · NIMHD · TUSKEGEE UNIVERSITY · PI YATES, CLAYTON · 2012 to 2016
$4.6M
Collaborative Human Tissue NetworkUM1CA183728 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GRIZZLE, WILLIAM E. · 2014 to 2018
$3.7M
NCI NIH HHS P30 CA013148NCI NIH HHS P50 CA089019NCI NIH HHS U54 CA118623NCI NIH HHS U54 CA118948NCI NIH HHS UM1 CA183728NIGMS NIH HHS P20 GM103434NIMHD NIH HHS G12 MD007585
6 · The paper itself

Abstract

Triple-negative breast cancer (TNBC) is a subtype with heterogeneous patient outcomes. Approximately 40% of patients experience rapid relapse, while the remaining patients have long-term disease-free survival. To determine if there are molecular differences between primary tumors that predict prognosis, we performed RNA-seq on 47 macrodissected tumors from newly diagnosed patients with TNBC (n = 47; 22 relapse, 25 no relapse; follow-up median, 8 years; range, 2-11 years). We discovered that expression of the MHC class II (MHC II) antigen presentation pathway in tumor tissue was the most significant pathway associated with progression-free survival (HR, 0.36; log-rank P = 0.0098). The association between MHC II pathway expression and good prognosis was confirmed in a public gene expression database of 199 TNBC cases (HR, 0.28; log-rank P = 4.5 × 10(-8)). Further analysis of immunohistochemistry, laser-capture microdissected tumors, and TNBC cell lines demonstrated that tumor cells, in addition to immune cells, aberrantly express the MHC II pathway. MHC II pathway expression was also associated with B-cell and T-cell infiltration in the tumor. Together, these data support the model that aberrant expression of the MHC II pathway in TNBC tumor cells may trigger an antitumor immune response that reduces the rate of relapse and enhances progression-free survival. Cancer Immunol Res; 4(5); 390-9. ©2016 AACR.

Indexed as

AdultAgedBiomarkers, TumorCluster AnalysisFemaleFollow-Up StudiesGene Expression Regulation, NeoplasticHLA-D AntigensHumansKaplan-Meier EstimateLymphocytes, Tumor-InfiltratingMiddle AgedNeoplasm StagingPrognosisTriple Negative Breast NeoplasmsTumor Cells, CulturedBiomarkers, TumorHLA-D Antigens

Identifiers

PMID26980599
PMCPMC4878913

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.