Evidence map›Paper›PMID 26980478›Full record

ArticleInternational journal of obesity (2005)2016

Hoxa5 undergoes dynamic DNA methylation and transcriptional repression in the adipose tissue of mice exposed to high-fat diet.

L Parrillo, V Costa, G A Raciti, M Longo, R Spinelli, R Esposito, C Nigro, V Vastolo, A Desiderio, F Zatterale and 4 more

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Article in International journal of obesity (2005), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

L ParrilloDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
V CostaInstitute of Genetics and Biophysics 'Adriano Buzzati-Traverso', National Research Council, Naples, Italy.
G A RacitiDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
M LongoDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
R SpinelliDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
R EspositoInstitute of Genetics and Biophysics 'Adriano Buzzati-Traverso', National Research Council, Naples, Italy.
C NigroDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
V VastoloDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
A DesiderioDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
F ZatteraleDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
A CiccodicolaInstitute of Genetics and Biophysics 'Adriano Buzzati-Traverso', National Research Council, Naples, Italy.
P FormisanoDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
C MieleDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
F BeguinotDipartimento di Scienze Mediche e Traslazionali dell'Università di Napoli 'Federico II', Naples, Italy.
University of Naples Federico II · ITInstitute for Experimental Endocrinology and Oncology · ITNational Research Council · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

objectivesThe genomic bases of the adipose tissue abnormalities induced by chronic positive calorie excess have been only partially elucidated. We adopted a genome-wide approach to directly test whether long-term high-fat diet (HFD) exposure affects the DNA methylation profile of the mouse adipose tissue and to identify the functional consequences of these changes. SUBJECTS/

methodsWe have used epididymal fat of mice fed either high-fat (HFD) or regular chow (STD) diet for 5 months and performed genome-wide DNA methylation analyses by methylated DNA immunoprecipitation sequencing (MeDIP-seq). Mouse Homeobox (Hox) Gene DNA Methylation PCR, RT-qPCR and bisulphite sequencing analyses were then performed.

resultsMice fed the HFD progressively expanded their adipose mass accompanied by a significant decrease in glucose tolerance (P<0.001) and insulin sensitivity (P<0.05). MeDIP-seq data analysis revealed a uniform distribution of differentially methylated regions (DMR) through the entire adipocyte genome, with a higher number of hypermethylated regions in HFD mice (P<0.005). This different methylation profile was accompanied by increased expression of the Dnmt3a DNA methyltransferase (Dnmt; P<0.05) and the methyl-CpG-binding domain protein Mbd3 (P<0.05) genes in HFD mice. Gene ontology analysis revealed that, in the HFD-treated mice, the Hox family of development genes was highly enriched in differentially methylated genes (P=0.008). To validate this finding, Hoxa5, which is implicated in fat tissue differentiation and remodeling, has been selected and analyzed by bisulphite sequencing, confirming hypermethylation in the adipose tissue from the HFD mice. Hoxa5 hypermethylation was associated with downregulation of Hoxa5 mRNA and protein expression. Feeding animals previously exposed to the HFD with a standard chow diet for two further months improved the metabolic phenotype of the animals, accompanied by return of Hoxa5 methylation and expression levels (P<0.05) to values similar to those of the control mice maintained under standard chow.

conclusionsHFD induces adipose tissue abnormalities accompanied by epigenetic changes at the Hoxa5 adipose tissue remodeling gene.

Indexed as

Diet, High-FatDNA MethylationDown-RegulationTranscription, GeneticAdipose TissueAnimalsDisease Models, AnimalEpigenesis, GeneticHomeodomain ProteinsImmunohistochemistryMaleMiceMice, Inbred C57BLObesityPhosphoproteinsTranscription FactorsHomeodomain ProteinsHoxa5 protein, mousePhosphoproteinsTranscription Factors

Identifiers

PMID26980478
OpenAlexW2301182486

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.