Evidence map›Paper›PMID 26980189›Full record

ArticleGenes & development2016

Fan1 deficiency results in DNA interstrand cross-link repair defects, enhanced tissue karyomegaly, and organ dysfunction.

Supawat Thongthip, Marina Bellani, Siobhan Q Gregg, Sunandini Sridhar, Brooke A Conti, Yanglu Chen, Michael M Seidman, Agata Smogorzewska

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Genes · 2024
    Article
  9. Article
  10. Review
  11. Modeling ofCells · 2023
    Article
  12. FAN1 removes triplet repeat extrusions via a PCNA- and RFC-dependent mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Recombination and restart at blocked replication forks.Current opinion in genetics & development · 2021
    Review
  19. Article
  20. RecurrentKidney international reports · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Supawat ThongthipLaboratory of Genome Maintenance, The Rockefeller University, New York, New York 10065, USA;
Marina BellaniLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health, Baltimore, Maryland 21224, USA.
Siobhan Q GreggLaboratory of Genome Maintenance, The Rockefeller University, New York, New York 10065, USA;
Sunandini SridharLaboratory of Genome Maintenance, The Rockefeller University, New York, New York 10065, USA;
Brooke A ContiLaboratory of Genome Maintenance, The Rockefeller University, New York, New York 10065, USA;
Yanglu ChenLaboratory of Genome Maintenance, The Rockefeller University, New York, New York 10065, USA;
Michael M SeidmanLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health, Baltimore, Maryland 21224, USA.
Agata SmogorzewskaLaboratory of Genome Maintenance, The Rockefeller University, New York, New York 10065, USA;
Rockefeller University · USNational Institute on Aging · USNational Institutes of Health · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Repair of localized DNA damageZIAAG000746 · NIA · NATIONAL INSTITUTE ON AGING · PI SEIDMAN, MICHAEL · 2009 to 2025
$30.0M
The role of nucleases in interstrand crosslink repairR01HL120922 · NHLBI · ROCKEFELLER UNIVERSITY · PI SMOGORZEWSKA, AGATA · 2014 to 2018
$2.1M
Intramural NIH HHSNCI NIH HHS P30 CA008748NHLBI NIH HHS R01 HL120922
6 · The paper itself

Abstract

Deficiency of FANCD2/FANCI-associated nuclease 1 (FAN1) in humans leads to karyomegalic interstitial nephritis (KIN), a rare hereditary kidney disease characterized by chronic renal fibrosis, tubular degeneration, and characteristic polyploid nuclei in multiple tissues. The mechanism of how FAN1 protects cells is largely unknown but is thought to involve FAN1's function in DNA interstrand cross-link (ICL) repair. Here, we describe a Fan1-deficient mouse and show that FAN1 is required for cellular and organismal resistance to ICLs. We show that the ubiquitin-binding zinc finger (UBZ) domain of FAN1, which is needed for interaction with FANCD2, is not required for the initial rapid recruitment of FAN1 to ICLs or for its role in DNA ICL resistance. Epistasis analyses reveal that FAN1 has cross-link repair activities that are independent of the Fanconi anemia proteins and that this activity is redundant with the 5'-3' exonuclease SNM1A. Karyomegaly becomes prominent in kidneys and livers of Fan1-deficient mice with age, and mice develop liver dysfunction. Treatment of Fan1-deficient mice with ICL-inducing agents results in pronounced thymic and bone marrow hypocellularity and the disappearance of c-kit(+) cells. Our results provide insight into the mechanism of FAN1 in ICL repair and demonstrate that the Fan1 mouse model effectively recapitulates the pathological features of human FAN1 deficiency.

Indexed as

AnimalsBone MarrowCross-Linking ReagentsDisease Models, AnimalDNA-Binding ProteinsDNA DamageDNA RepairEndodeoxyribonucleasesEndonucleasesEpistasis, GeneticExodeoxyribonucleasesKidneyLiverLiver DiseasesMiceMultifunctional EnzymesCross-Linking ReagentsDNA-Binding ProteinsEndodeoxyribonucleasesEndonucleasesExodeoxyribonucleasesFan1 protein, mouseMultifunctional EnzymesMus81 protein, mouseDNA damageFAN1Fanconi anemiainterstrand cross-link repairkaryomegalic interstitial nephritisSNM1A

Identifiers

PMID26980189
PMCPMC4803051
OpenAlexW2300845163

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.