Evidence map›Paper›PMID 26979955›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Detection, phenotyping, and quantification of antigen-specific T cells using a peptide-MHC dodecamer.

Jun Huang, Xun Zeng, Natalia Sigal, Peder J Lund, Laura F Su, Huang Huang, Yueh-hsiu Chien, Mark M Davis

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 95 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Low-affinity CD8American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2024
    Article
  7. Review
  8. What's the Catch? The Significance of Catch Bonds in T Cell Activation.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  9. Review
  10. CD4Nature immunology · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. Inflammatory Cytokines That Enhance Antigen Responsiveness of Naïve CD8International journal of molecular sciences · 2022
    Article
  15. Article
  16. Article
  17. Article
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  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jun HuangDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305; mmdavis@stanford.edu huangjun@uchicago.edu.
Xun ZengDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305;
Natalia SigalDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305;
Peder J LundDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305;
Laura F SuDepartment of Medicine, Division of Rheumatology, University of Pennsylvania, Philadelphia, PA 19104;
Huang HuangDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305;
Yueh-hsiu ChienDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305;
Mark M DavisDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305; Stanford Institute for Immunity, Transplantation, and Infection, Stanford University, Stanford, CA 94305; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305 mmdavis@stanford.edu huangjun@uchicago.edu.
Stanford University · USHoward Hughes Medical Institute · USUniversity of Pennsylvania · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Vaccination and infection: indicators of immunological health and responsivenessU19AI090019 · NIAID · STANFORD UNIVERSITY · PI DAVIS, MARK MORRIS · 2010 to 2015
$17.3M
Recognition of cross-reactive antigens by human CD4+ T cellsR00AI106941 · NIAID · UNIVERSITY OF CHICAGO · PI HUANG, JUN · 2015 to 2016
$497k
Recognition of cross-reactive antigens by human CD4+ T cellsK99AI106941 · NIAID · STANFORD UNIVERSITY · PI HUANG, JUN · 2014 to 2014
$99k
Howard Hughes Medical InstituteNIAID NIH HHS K99 AI106941NIAID NIH HHS K99AI106941NIAID NIH HHS R00 AI106941NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI090019
6 · The paper itself

Abstract

Here we report a peptide-MHC (pMHC) dodecamer as a "next generation" technology that is a significantly more sensitive and versatile alternative to pMHC tetramers for the detection, isolation, and phenotypic analysis of antigen-specific T cells. In particular, dodecamers are able to detect two- to fivefold more antigen-specific T cells in both human and murine CD4(+)and CD8(+)αβ T-cell compartments compared with the equivalent tetramers. The low-affinity, tetramer-negative, dodecamer-positive T cells showed comparable effector cytokine responses as those of high-affinity, tetramer-positive T cells. Dodecamers are able to detect early stage CD4(+)CD8(+)double-positive thymocytes on which T-cell receptors are 10- to 30-fold less dense than mature T cells. Dodecamers also show utility in the analysis of γδ T cells and in cytometry by time-of-flight applications. This construct has a simple structure with a central scaffold protein linked to four streptavidin molecules, each having three pMHC ligands or other molecules. The dodecamer is straightforward and inexpensive to produce and is compatible with current tetramer technology and commercially available streptavidin conjugates.

Indexed as

AnimalsCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesFlow CytometryHumansImmunophenotypingMajor Histocompatibility ComplexMice, TransgenicPeptidesReceptors, Antigen, T-CellSingle-Cell AnalysisT-LymphocytesPeptidesReceptors, Antigen, T-Cellantigen-specific T cellaviditydodecamerpeptide-MHC

Identifiers

PMID26979955
PMCPMC4822615
OpenAlexW2299094597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.