Evidence map›Paper›PMID 26979928›Full record

ArticleScientific reports2016

RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA-dependent RNA polymerases.

Lydia J R Hunter, Samuel F Brockington, Alex M Murphy, Adrienne E Pate, Kristina Gruden, Stuart A MacFarlane, Peter Palukaitis, John P Carr

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  4. Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  17. African journal of biotechnology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Lydia J R HunterDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.
Samuel F BrockingtonDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.
Alex M MurphyDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.
Adrienne E PateDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.
Kristina GrudenNational Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Stuart A MacFarlaneThe James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Peter PalukaitisThe James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
John P CarrDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.
University of Cambridge · GBJames Hutton Institute · GBNational Institute of Biology · SISeoul Women's University · KR

Funding

Biotechnology and Biological Sciences Research Council BB/D014376/1Biotechnology and Biological Sciences Research Council BB/F014376/1Biotechnology and Biological Sciences Research Council BB/J011762/1
6 · The paper itself

Abstract

Cellular RNA-dependent RNA polymerases (RDRs) catalyze synthesis of double-stranded RNAs that can serve to initiate or amplify RNA silencing. Arabidopsis thaliana has six RDR genes; RDRs 1, 2 and 6 have roles in anti-viral RNA silencing. RDR6 is constitutively expressed but RDR1 expression is elevated following plant treatment with defensive phytohormones. RDR1 also contributes to basal virus resistance. RDR1 has been studied in several species including A. thaliana, tobacco (Nicotiana tabacum), N. benthamiana, N. attenuata and tomato (Solanum lycopersicum) but not to our knowledge in potato (S. tuberosum). StRDR1 was identified and shown to be salicylic acid-responsive. StRDR1 transcript accumulation decreased in transgenic potato plants constitutively expressing a hairpin construct and these plants were challenged with three viruses: potato virus Y, potato virus X, and tobacco mosaic virus. Suppression of StRDR1 gene expression did not increase the susceptibility of potato to these viruses. Phylogenetic analysis of RDR genes present in potato and in a range of other plant species identified a new RDR gene family, not present in potato and found only in Rosids (but apparently lost in the Rosid A. thaliana) for which we propose the name RDR7.

Indexed as

RNA InterferenceGene Expression Regulation, EnzymologicGene Expression Regulation, PlantHost-Pathogen InteractionsPlant DiseasesPlant ProteinsPlants, Genetically ModifiedPotexvirusPotyvirusReverse Transcriptase Polymerase Chain ReactionRNA-Dependent RNA PolymeraseSalicylic AcidSolanum tuberosumTobacco Mosaic VirusPlant ProteinsRNA-Dependent RNA PolymeraseSalicylic Acid

Identifiers

PMID26979928
PMCPMC4793286
OpenAlexW2285410227

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.