Evidence map›Paper›PMID 26979661›Full record

ArticleScientific reports2016

Identification and characterisation of Dof transcription factors in the cucumber genome.

Chang-Long Wen, Qing Cheng, Liqun Zhao, Aijun Mao, Jingjing Yang, Shuancang Yu, Yiqun Weng, Yong Xu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
18.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 113 citations in OpenAlex.

  1. Pooled it
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  3. Genome-Wide Characterization of thePlants (Basel, Switzerland) · 2026
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  5. Systematic Analysis ofInternational journal of molecular sciences · 2025
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  6. Identification of theBiology · 2025
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  7. Article
  8. Article
  9. Genome-Based Identification of the Dof Gene Family in ThreeInternational journal of molecular sciences · 2024
    Article
  10. Article
  11. Identification and functional analysis of theFrontiers in plant science · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Genome-Wide Identification of theInternational journal of molecular sciences · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Chang-Long WenBeijing Vegetable Research Center (BVRC), Beijing Academy of Agricultural and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing 100097, China.
Qing ChengBeijing Vegetable Research Center (BVRC), Beijing Academy of Agricultural and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing 100097, China.
Liqun ZhaoBeijing Agricultural extension station, Beijing 100029, China.
Aijun MaoBeijing Vegetable Research Center (BVRC), Beijing Academy of Agricultural and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing 100097, China.
Jingjing YangBeijing Vegetable Research Center (BVRC), Beijing Academy of Agricultural and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing 100097, China.
Shuancang YuBeijing Vegetable Research Center (BVRC), Beijing Academy of Agricultural and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing 100097, China.
Yiqun WengUSDA-ARS, Vegetable Crops Research Unit, Horticulture Department, University of Wisconsin, Madison, WI 53706, USA.
Yong XuBeijing Vegetable Research Center (BVRC), Beijing Academy of Agricultural and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing 100097, China.
Beijing Academy of Agricultural and Forestry Sciences · CNNanjing Institute of Vegetable Science · CNUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cucumber is vulnerable to many foliage diseases. Recent studies reported cloning of candidate genes for several diseases in cucumber; however, the exact defence mechanisms remain unclear. Dof genes have been shown to play significant roles in plant growth, development, and responses to biotic and abiotic stresses. Dof genes coding for plant-specific transcription factors can promote large-scale expression of defence-related genes at whole genome level. The genes in the family have been identified and characterized in several plant species, but not in cucumber. In the present study, we identified 36 CsDof members from the cucumber draft genomes which could be classified into eight groups. The proportions of the CsDof family genes, duplication events, chromosomal locations, cis-elements and miRNA target sites were comprehensively investigated. Consequently, we analysed the expression patterns of CsDof genes in specific tissues and their response to two biotic stresses (watermelon mosaic virus and downy mildew). These results indicated that CsDof may be involved in resistance to biotic stresses in cucumber.

Indexed as

Multigene FamilyChromosome MappingCluster AnalysisCucumis sativusGene DuplicationGene Expression ProfilingGene Expression Regulation, PlantGenome, PlantHost-Pathogen InteractionsMicroRNAsOomycetesPhylogenyPlant DiseasesPlant ProteinsPotyvirusRegulatory Elements, TranscriptionalMicroRNAsPlant ProteinsTranscription Factors

Identifiers

PMID26979661
PMCPMC4793291
OpenAlexW2312531595

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.