Evidence map›Paper›PMID 26979597›Full record

ArticleStem cell research & therapy2016

Genome-wide gene expression analyses reveal unique cellular characteristics related to the amenability of HPC/HSCs into high-quality induced pluripotent stem cells.

Shuai Gao, Li Tao, Xinfeng Hou, Zijian Xu, Wenqiang Liu, Kun Zhao, Mingyue Guo, Hong Wang, Tao Cai, Jianhui Tian and 2 more

Open access · goldAbstract read
In one paragraph

Article in Stem cell research & therapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Shuai GaoNational Institute of Biological Sciences, NIBS, Beijing 102206, China.
Li TaoMinistry of Agriculture Key Laboratory of Animal Genetics, Breeding and Reproduction; National Engineering Laboratory for Animal Breeding; College of Animal Sciences and Technology, China Agricultural University, Beijing 100193, China.
Xinfeng HouNational Institute of Biological Sciences, NIBS, Beijing 102206, China.
Zijian XuNational Institute of Biological Sciences, NIBS, Beijing 102206, China.
Wenqiang LiuNational Institute of Biological Sciences, NIBS, Beijing 102206, China.
Kun ZhaoSchool of Life Sciences and Technology, Tongji University, Shanghai 200092, China.
Mingyue GuoSchool of Life Sciences and Technology, Tongji University, Shanghai 200092, China.
Hong WangNational Institute of Biological Sciences, NIBS, Beijing 102206, China.
Tao CaiNational Institute of Biological Sciences, NIBS, Beijing 102206, China.
Jianhui TianMinistry of Agriculture Key Laboratory of Animal Genetics, Breeding and Reproduction; National Engineering Laboratory for Animal Breeding; College of Animal Sciences and Technology, China Agricultural University, Beijing 100193, China.
Shaorong GaoNational Institute of Biological Sciences, NIBS, Beijing 102206, China.
Gang ChangInstitute of Molecular Medicine, Health Science Center, Shenzhen University, Shenzhen 518060, China. changgang@szu.edu.cn.
Tongji University · CNNational Institute of Biological Sciences, Beijing · CNChina Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTranscription factor-mediated reprogramming can efficiently convert differentiated cells into induced pluripotent stem cells (iPSCs). Furthermore, many cell types have been shown to be amenable to reprogramming into iPSCs, such as neural stem cells, hematopoietic progenitor and stem cells (HPC/HSCs). However, the mechanisms related to the amenability of these cell types to be reprogrammed are still unknown.

methodsHerein, we attempt to elucidate the mechanisms of HPC/HSC reprogramming using the sequential reprogramming system that we have previously established.

resultsWe found that HPC/HSCs were amenable to transcription factor-mediated reprogramming, which yielded a high frequency of fully reprogrammed HPC/HSC-iPSCs. Genome-wide gene expression analyses revealed select down-regulated tumor suppressor and mesenchymal genes as well as up-regulated oncogenes in HPC/HSCs compared with mouse embryonic fibroblasts (MEFs), indicating that these genes may play important roles during the reprogramming of HPC/HSCs. Additional studies provided insights into the contribution of select tumor suppressor genes (p21, Ink4a and Arf) and an epithelial-to-mesenchymal transition (EMT) factor (Snail1) to the reprogramming process of HPC/HSCs.

conclusionsOur findings demonstrate that HPC/HSCs carry unique cellular characteristics, which determine the amenability of HPC/HSCs to be reprogrammed into high-quality iPSCs.

Indexed as

TranscriptomeAnimalsCell DifferentiationCells, CulturedCell ShapeCellular ReprogrammingGenomeHematopoietic Stem CellsInduced Pluripotent Stem CellsMiceMice, 129 StrainMouse Embryonic Stem CellsHematopoietic progenitor and stem cellsInduced pluripotent stem cellsPluripotencyReprogramming

Identifiers

PMID26979597
PMCPMC4791787
OpenAlexW2298416115

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.