Evidence map›Paper›PMID 26979141›Full record

ArticleBMC biochemistry2016

Linalool isomerase, a membrane-anchored enzyme in the anaerobic monoterpene degradation in Thauera linaloolentis 47Lol.

Robert Marmulla, Barbara Šafarić, Stephanie Markert, Thomas Schweder, Jens Harder

Open access · hybridAbstract read
In one paragraph

Article in BMC biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. ExploringMolecules (Basel, Switzerland) · 2019
    Article
  5. Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. On the current role of hydratases in biocatalysis.Applied microbiology and biotechnology · 2018
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Robert MarmullaDepartment of Microbiology, Max Planck Institute for Marine Microbiology, Celsiusstr. 1, D-28359, Bremen, Germany.
Barbara ŠafarićDepartment of Microbiology, Max Planck Institute for Marine Microbiology, Celsiusstr. 1, D-28359, Bremen, Germany.
Stephanie MarkertInstitute for Pharmacy, Department of Pharmaceutical Biotechnology, University of Greifswald, Felix-Hausdorff-Str. 3, D-17487, Greifswald, Germany.
Thomas SchwederInstitute for Pharmacy, Department of Pharmaceutical Biotechnology, University of Greifswald, Felix-Hausdorff-Str. 3, D-17487, Greifswald, Germany.
Jens HarderDepartment of Microbiology, Max Planck Institute for Marine Microbiology, Celsiusstr. 1, D-28359, Bremen, Germany. jharder@mpi-bremen.de.
Max Planck Institute for Marine Microbiology · DEUniversität Greifswald · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThauera linaloolentis 47Lol uses the tertiary monoterpene alcohol (R,S)-linalool as sole carbon and energy source under denitrifying conditions. The conversion of linalool to geraniol had been observed in carbon-excess cultures, suggesting the presence of a 3,1-hydroxyl-Δ(1)-Δ(2)-mutase (linalool isomerase) as responsible enzyme. To date, only a single enzyme catalyzing such a reaction is described: the linalool dehydratase/isomerase (Ldi) from Castellaniella defragrans 65Phen acting only on (S)-linalool.

resultsThe linalool isomerase activity was located in the inner membrane. It was enriched by subcellular fractionation and sucrose gradient centrifugation. MALDI-ToF MS analysis of the enriched protein identified the corresponding gene named lis that codes for the protein in the strain with the highest similarity to the Ldi. Linalool isomerase is predicted to have four transmembrane helices at the N-terminal domain and a cytosolic domain. Enzyme activity required a reductant for activation. A specific activity of 3.42 ± 0.28 nkat mg * protein(-1) and a kM value of 455 ± 124 μM were determined for the thermodynamically favored isomerization of geraniol to both linalool isomers at optimal conditions of pH 8 and 35 °C.

conclusionThe linalool isomerase from T. linaloolentis 47Lol represents a second member of the enzyme class 5.4.4.4, next to the linalool dehydratase/isomerase from C. defragrans 65Phen. Besides considerable amino acid sequence similarity both enzymes share common characteristics with respect to substrate affinity, pH and temperature optima, but differ in the dehydratase activity and the turnover of linalool isomers.

Indexed as

Acyclic MonoterpenesCell WallCentrifugation, Density GradientChromatography, LiquidElectrophoresis, Polyacrylamide GelHydrogen-Ion ConcentrationHydro-LyasesIsomerasesIsomerismKineticsMonoterpenesRecombinant ProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSpheroplastsSubstrate SpecificityTemperatureAcyclic MonoterpenesgeraniolHydro-LyasesIsomeraseslinaloolMonoterpenesRecombinant ProteinsTerpenesAllyl alcoholGeraniolIsomeraseLinaloolMonoterpeneThauera

Identifiers

PMID26979141
PMCPMC4791888
OpenAlexW2298503486

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.