Evidence map›Paper›PMID 26978794›Full record

ArticleeLife2016

Cooperation between distinct viral variants promotes growth of H3N2 influenza in cell culture.

Katherine S Xue, Kathryn A Hooper, Anja R Ollodart, Adam S Dingens, Jesse D Bloom

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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  5. Article
  6. Open questions in the social lives of viruses.Journal of evolutionary biology · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Evolutionary dynamics within and among competing groups.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. A Virus Is a Community: Diversity within Negative-Sense RNA Virus Populations.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Coronavirus hemagglutinin-esterase and spike proteins coevolve for functional balance and optimal virion avidity.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Katherine S XueDepartment of Genome Sciences, University of Washington, Seattle, United States.ORCID http://orcid.org/0000-0002-4094-3615
Kathryn A HooperDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States.
Anja R OllodartDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States.
Adam S DingensDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States.
Jesse D BloomDepartment of Genome Sciences, University of Washington, Seattle, United States.ORCID http://orcid.org/0000-0003-1267-3408

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Understanding Transmission with Integrated Genetic and Epidemiologic InferenceU54GM111274 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VESPIGNANI, ALESSANDRO · 2014 to 2018
$12.5M
Mapping epistasis in molecular evolution: the influenza nucleoproteinR01GM102198 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BLOOM, JESSE D · 2012 to 2016
$1.6M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
NIGMS NIH HHS R01 GM102198NIGMS NIH HHS R01GM102198NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32GM007270NIGMS NIH HHS U54 GM111274NIH HHS S10 OD020069
6 · The paper itself

Abstract

RNA viruses rapidly diversify into quasispecies of related genotypes. This genetic diversity has long been known to facilitate adaptation, but recent studies have suggested that cooperation between variants might also increase population fitness. Here, we demonstrate strong cooperation between two H3N2 influenza variants that differ by a single mutation at residue 151 in neuraminidase, which normally mediates viral exit from host cells. Residue 151 is often annotated as an ambiguous amino acid in sequenced isolates, indicating mixed viral populations. We show that mixed populations grow better than either variant alone in cell culture. Pure populations of either variant generate the other through mutation and then stably maintain a mix of the two genotypes. We suggest that cooperation arises because mixed populations combine one variant's proficiency at cell entry with the other's proficiency at cell exit. Our work demonstrates a specific cooperative interaction between defined variants in a viral quasispecies.

Indexed as

Genetic VariationViral LoadAnimalsDogsInfluenza A Virus, H3N2 SubtypeMadin Darby Canine Kidney CellsMutant ProteinsMutation, MissenseNeuraminidaseViral ProteinsMutant ProteinsNA protein, influenza A virusNeuraminidaseViral ProteinscooperationD151GD151Nevolutionary biologygenomicsinfectious diseaseinfluenzamicrobiologyneuraminidasequasispeciesvirus

Identifiers

PMID26978794
PMCPMC4805539

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.