Evidence map›Paper›PMID 26977448›Full record

ArticleData in brief2016

SILAC based protein profiling data of MKK3 knockout mouse embryonic fibroblasts.

Anup Srivastava, Amanda S Shinn, TuKiet T Lam, Patty J Lee, Praveen Mannam

Open access · goldAbstract read
In one paragraph

Article in Data in brief, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anup SrivastavaPulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520-8057, USA.
Amanda S ShinnPulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520-8057, USA.
TuKiet T LamMS & Proteomics Resource at Yale University, WM Keck Foundation Biotechnology Resource Laboratory, Department of Molecular Biophysics and Biochemistry, New Haven, CT 06520-8057, USA.
Patty J LeePulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520-8057, USA.
Praveen MannamPulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520-8057, USA.
Yale University · USW. M. Keck Foundation · US

Funding

Yale Study Support Suite (YES3): Dashboard and Web Portal Software Supporting Research Workflow through integrated, customizable REDCap External ModulesP30AG021342 · NIA · YALE UNIVERSITY · PI Denise Esserman · 2002 to 2026
$37.9M
Heme Oxygenase-1 in Lung Ischemia-Reperfusion InjuryR01HL071595 · NHLBI · YALE UNIVERSITY · PI LEE, PATTY J · 2004 to 2012
$3.4M
Innate Immune Mechanisms in EmphysemaR01HL090660 · NHLBI · YALE UNIVERSITY · PI LEE, PATTY J · 2009 to 2012
$1.7M
Nano-UPLC LTQ-Orbitrap Velos MS System for Yale University Keck LaboratoryS10RR031795 · NCRR · YALE UNIVERSITY · PI GULCICEK, EROL E · 2011 to 2011
$600k
MKK3 is a Mediator of Sepsis and Lung Injury in the ElderlyR03AG042358 · NIA · YALE UNIVERSITY · PI MANNAM, PRAVEEN · 2012 to 2013
$162k
NCRR NIH HHS S10 RR031795NHLBI NIH HHS R01 HL071595NHLBI NIH HHS R01 HL090660NIA NIH HHS P30 AG021342NIA NIH HHS R03 AG042358
6 · The paper itself

Abstract

This data article reports changes in the phospho and total proteome of MKK3 knock out (MKK3(-) (/) (-)) mouse embryonic fibroblasts (MEFs). The dataset generated highlights the changes at protein level which can be helpful for understanding targets of the MAP kinase signaling pathway. Data was collected after TiO2-based phosphopeptide enrichment of whole cell lysate at baseline condition with bottom-up SILAC-based LC MS/MS quantitative mass spectrometry. We report all the proteins and peptides identified and quantified in MKK3(-/-) and WT MEFs. The altered pathways in MKK3(-/-) MEFs were analyzed by Database for Annotation, Visualization and Integrated Discovery (DAVID, v6.7) and Ingenuity Pathway Analysis (IPA) and are presented as a table and graph, respectively. The data reported here is related to the published work [1]. All the associated mass spectrometry data has been deposited in the Yale Protein Expression Database (YPED) with the web-link to the data: http://yped.med.yale.edu/repository/ViewSeriesMenu.do;jsessionid=6A5CB07543D8B529FAE8C3FCFE29471D?series_id=5044&series_name=MMK3+Deletion+in+MEFs.

Indexed as

MitochondriaMKK3ProteomicsSILAC

Identifiers

PMID26977448
PMCPMC4782019
OpenAlexW2290535932

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.