Evidence map›Paper›PMID 26976706›Full record

ArticleScientific reports2016

Reconstruction of diaminopimelic acid biosynthesis allows characterisation of Mycobacterium tuberculosis N-succinyl-L,L-diaminopimelic acid desuccinylase.

Veeraraghavan Usha, Adrian J Lloyd, David I Roper, Christopher G Dowson, Guennadi Kozlov, Kalle Gehring, Smita Chauhan, Hasan T Imam, Claudia A Blindauer, Gurdyal S Besra

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Synthesis of Pyrazole-Based Inhibitors of the Bacterial EnzymeInternational journal of molecular sciences · 2024
    Article
  3. Inoculation withFrontiers in microbiology · 2023
    Article
  4. Chemical-genetic interaction mapping links carbon metabolism and cell wall structure to tuberculosis drug efficacy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
  6. Review
  7. Differential reactivity of closely related zinc(II)-binding metallothioneins from the plant Arabidopsis thaliana.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Veeraraghavan UshaSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Adrian J LloydSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
David I RoperSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Christopher G DowsonSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Guennadi KozlovDepartment of Biochemistry, McGill University, Montreal, Quebec, H3G 1Y6, Canada.
Kalle GehringDepartment of Biochemistry, McGill University, Montreal, Quebec, H3G 1Y6, Canada.
Smita ChauhanSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Hasan T ImamDepartment of Chemistry, University of Warwick, Coventry, CV4 7AL,UK.
Claudia A BlindauerDepartment of Chemistry, University of Warwick, Coventry, CV4 7AL,UK.
Gurdyal S BesraSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
University of Warwick · GBMcGill University · CAUniversity of Birmingham · GB

Funding

Medical Research Council G0500643Medical Research Council MR/K012118/1Medical Research Council MR/N002679/1Wellcome Trust
6 · The paper itself

Abstract

With the increased incidence of tuberculosis (TB) caused by Mycobacterium tuberculosis there is an urgent need for new and better anti-tubercular drugs. N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) is a key enzyme in the succinylase pathway for the biosynthesis of meso-diaminopimelic acid (meso-DAP) and L-lysine. DapE is a zinc containing metallohydrolase which hydrolyses N-succinyl L,L diaminopimelic acid (L,L-NSDAP) to L,L-diaminopimelic acid (L,L-DAP) and succinate. M. tuberculosis DapE (MtDapE) was cloned, over-expressed and purified as an N-terminal hexahistidine ((His)6) tagged fusion containing one zinc ion per DapE monomer. We redesigned the DAP synthetic pathway to generate L,L-NSDAP and other L,L-NSDAP derivatives and have characterised MtDapE with these substrates. In contrast to its other Gram negative homologues, the MtDapE was insensitive to inhibition by L-captopril which we show is consistent with novel mycobacterial alterations in the binding site of this drug.

Indexed as

AmidohydrolasesBacterial ProteinsBinding SitesCaptoprilDiaminopimelic AcidHistidineMycobacterium tuberculosisOligopeptidesZincAmidohydrolasesBacterial ProteinsCaptoprilDiaminopimelic AcidHis-His-His-His-His-HisHistidineOligopeptidesZinc

Identifiers

PMID26976706
PMCPMC4791643
OpenAlexW2319069564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.