Evidence map›Paper›PMID 26976575›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Identification and characterization of influenza variants resistant to a viral endonuclease inhibitor.

Min-Suk Song, Gyanendra Kumar, William R Shadrick, Wei Zhou, Trushar Jeevan, Zhenmei Li, P Jake Slavish, Thomas P Fabrizio, Sun-Woo Yoon, Thomas R Webb and 2 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Identification of Influenza PAMolecules (Basel, Switzerland) · 2021
    Article
  16. Article
  17. Article
  18. ImprovedFrontiers in microbiology · 2021
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Min-Suk SongDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105;
Gyanendra KumarDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105;
William R ShadrickDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105;
Wei ZhouBioscience Division, SRI International, Menlo Park, CA 94025.
Trushar JeevanDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105;
Zhenmei LiDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105;
P Jake SlavishDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105;
Thomas P FabrizioDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105;ORCID http://orcid.org/0000-0002-8960-0728
Sun-Woo YoonDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105;
Thomas R WebbBioscience Division, SRI International, Menlo Park, CA 94025 Stephen.white@stjude.org richard.webby@stjude.org thomas.webb@sri.com.
Richard J WebbyDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN 38105; Stephen.white@stjude.org richard.webby@stjude.org thomas.webb@sri.com.
Stephen W WhiteDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105; Stephen.white@stjude.org richard.webby@stjude.org thomas.webb@sri.com.
St. Jude Children's Research Hospital · USSRI International · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Small molecule inhibitory leads against influenza RdRpR01AI098757 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBB, THOMAS ROY · 2012 to 2016
$3.1M
NCI NIH HHS CA21765NCI NIH HHS P30 CA021765NIAID NIH HHS AI098757NIAID NIH HHS HHSN266200700005CNIAID NIH HHS HHSN272201400006CNIAID NIH HHS R01 AI098757PHS HHS HHSN266200700005CPHS HHS HHSN272201400006C
6 · The paper itself

Abstract

The influenza endonuclease is an essential subdomain of the viral RNA polymerase. It processes host pre-mRNAs to serve as primers for viral mRNA and is an attractive target for antiinfluenza drug discovery. Compound L-742,001 is a prototypical endonuclease inhibitor, and we found that repeated passaging of influenza virus in the presence of this drug did not lead to the development of resistant mutant strains. Reduced sensitivity to L-742,001 could only be induced by creating point mutations via a random mutagenesis strategy. These mutations mapped to the endonuclease active site where they can directly impact inhibitor binding. Engineered viruses containing the mutations showed resistance to L-742,001 both in vitro and in vivo, with only a modest reduction in fitness. Introduction of the mutations into a second virus also increased its resistance to the inhibitor. Using the isolated wild-type and mutant endonuclease domains, we used kinetics, inhibitor binding and crystallography to characterize how the two most significant mutations elicit resistance to L-742,001. These studies lay the foundation for the development of a new class of influenza therapeutics with reduced potential for the development of clinical endonuclease inhibitor-resistant influenza strains.

Indexed as

AnimalsCatalytic DomainCrystallography, X-RayDogsDrug Resistance, ViralEndonucleasesEnzyme InhibitorsGenetic VariationHydroxybutyratesInfluenza A virusInfluenza A Virus, H1N1 SubtypeKineticsMadin Darby Canine Kidney CellsModels, MolecularMutagenesisPiperidinesEndonucleasesEnzyme InhibitorsHydroxybutyratesL-742,001PiperidinesRNA-Dependent RNA Polymerasediketo acidinfectionmutationreplicationvirus

Identifiers

PMID26976575
PMCPMC4822642
OpenAlexW2298018838

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.