ArticleScientific reports2016
Genomic identification of WRKY transcription factors in carrot (Daucus carota) and analysis of evolution and homologous groups for plants.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.
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50 citing papers in PubMed, 96 citations in OpenAlex.
- Genome-wide in-silico characterization and expression pattern analysis of GATA transcription factor family in carrot (Daucus carota subsp. sativus).Functional & integrative genomics · 2026Article
- High-quality chromosome-level genomic insights into molecular adaptation to low-temperature stress in Madhuca longifolia in southern subtropical China.BMC genomics · 2024Article
- Genome-wide identification of WRKY transcription factor family members in Miscanthus sinensis (Miscanthus sinensis Anderss).Scientific reports · 2024Article
- Genome-Wide Analysis of WRKY Transcription Factors Involved in Abiotic Stress and ABA Response inInternational journal of molecular sciences · 2023Article
- Mechanisms of salinity tolerance and their possible application in the breeding of vegetables.BMC plant biology · 2023Review
- Carotenoids and Their Health Benefits as Derived via Their Interactions with Gut Microbiota.Advances in nutrition (Bethesda, Md.) · 2023Review
- The role of WRKY transcription factors in exogenous potassium (KFrontiers in genetics · 2023Article
- Characterization and expression analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
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- Transcriptome sequencing and differential expression analysis of natural and BTH-treated wound healing in potato tubers (Solanum tuberosum L.).BMC genomics · 2022Article
- Genome-Wide Analysis of the Banana WRKY Transcription Factor Gene Family Closely Related to Fruit Ripening and Stress.Plants (Basel, Switzerland) · 2022Article
- Review
- WRKY transcription factors (TFs): Molecular switches to regulate drought, temperature, and salinity stresses in plants.Frontiers in plant science · 2022Review
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- Comprehensive genomics and expression analysis of eceriferum (CER) genes in sunflower (Saudi journal of biological sciences · 2021Article
- Dynamic differential evolution schemes of WRKY transcription factors in domesticated and wild rice.Scientific reports · 2021Article
- Genome-Wide Identification of GRAS Gene Family and Their Responses to Abiotic Stress inInternational journal of molecular sciences · 2021Article
- Genome-Wide Transcriptomic Identification and Functional Insight of LilyPlants (Basel, Switzerland) · 2021Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
WRKY transcription factors belong to one of the largest transcription factor families. These factors possess functions in plant growth and development, signal transduction, and stress response. Here, we identified 95 DcWRKY genes in carrot based on the carrot genomic and transcriptomic data, and divided them into three groups. Phylogenetic analysis of WRKY proteins from carrot and Arabidopsis divided these proteins into seven subgroups. To elucidate the evolution and distribution of WRKY transcription factors in different species, we constructed a schematic of the phylogenetic tree and compared the WRKY family factors among 22 species, which including plants, slime mold and protozoan. An in-depth study was performed to clarify the homologous factor groups of nine divergent taxa in lower and higher plants. Based on the orthologous factors between carrot and Arabidopsis, 38 DcWRKY proteins were calculated to interact with other proteins in the carrot genome. Yeast two-hybrid assay showed that DcWRKY20 can interact with DcMAPK1 and DcMAPK4. The expression patterns of the selected DcWRKY genes based on transcriptome data and qRT-PCR suggested that those selected DcWRKY genes are involved in root development, biotic and abiotic stress response. This comprehensive analysis provides a basis for investigating the evolution and function of WRKY genes.
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