Evidence map›Paper›PMID 26975455›Full record

ArticleScientific reports2016

Insights into Adaptations to a Near-Obligate Nematode Endoparasitic Lifestyle from the Finished Genome of Drechmeria coniospora.

Liwen Zhang, Zhengfu Zhou, Qiannan Guo, Like Fokkens, Márton Miskei, István Pócsi, Wei Zhang, Ming Chen, Lei Wang, Yamin Sun and 12 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
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  4. Telomere-to-Telomere Genome Assembly of Tibetan Medicinal MushroomJournal of fungi (Basel, Switzerland) · 2023
    Article
  5. Article
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  8. Phylogeny and Systematics of the GenusJournal of fungi (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Article
  11. Increased Pathogenicity of the Nematophagous FungusFrontiers in fungal biology · 2021
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Comparative genomic analyses reveal the features for adaptation to nematodes in fungi.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 11 institutions in 4 countries.

Liwen ZhangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Zhengfu ZhouKey Laboratory of Agricultural Genomics (Beijing), Ministry of Agriculture, China.
Qiannan GuoBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Like FokkensMolecular Plant Pathology, University of Amsterdam, Amsterdam, the Netherlands.
Márton MiskeiDepartment of Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, Hungary.
István PócsiDepartment of Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, Hungary.
Wei ZhangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Ming ChenBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Lei WangTianjin Key Laboratory of Microbial Functional Genomics, TEDA School of Biological Sciences and Biotechnology, Nankai University, Tianjin, China.
Yamin SunTianjin Key Laboratory of Microbial Functional Genomics, TEDA School of Biological Sciences and Biotechnology, Nankai University, Tianjin, China.
Bruno G G DonzelliPlant Pathology &Plant-Microbe Biology, Cornell University, Ithaca, New York, USA.
Donna M GibsonUSDA-ARS, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, USA.
David R NelsonDepartment of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
Jian-Guang LuoState Key Laboratory of Natural Medicines, Department of Natural Medicinal Chemistry, China Pharmaceutical University, Nanjing, China.
Martijn RepMolecular Plant Pathology, University of Amsterdam, Amsterdam, the Netherlands.
Hang LiuKey Laboratory of Agricultural Genomics (Beijing), Ministry of Agriculture, China.
Shengnan YangKey Laboratory of Agricultural Genomics (Beijing), Ministry of Agriculture, China.
Jing WangKey Laboratory of Agricultural Genomics (Beijing), Ministry of Agriculture, China.
Stuart B KrasnoffUSDA-ARS, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, USA.
Yuquan XuKey Laboratory of Agricultural Genomics (Beijing), Ministry of Agriculture, China.
István MolnárNatural Products Center, School of Natural Resources and the Environment, University of Arizona, Tucson, Arizona, USA.
Min LinBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Agricultural Genomics Institute at Shenzhen · CNBiotechnology Research Institute · CNChinese Academy of Agricultural Sciences · CNNankai University · CNRobert W. Holley Center for Agriculture & Health · USUniversity of Amsterdam · NLUniversity of Debrecen · HUChina Pharmaceutical University · CNCornell University · USUniversity of Arizona · USUniversity of Tennessee Health Science Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nematophagous fungi employ three distinct predatory strategies: nematode trapping, parasitism of females and eggs, and endoparasitism. While endoparasites play key roles in controlling nematode populations in nature, their application for integrated pest management is hindered by the limited understanding of their biology. We present a comparative analysis of a high quality finished genome assembly of Drechmeria coniospora, a model endoparasitic nematophagous fungus, integrated with a transcriptomic study. Adaptation of D. coniospora to its almost completely obligate endoparasitic lifestyle led to the simplification of many orthologous gene families involved in the saprophytic trophic mode, while maintaining orthologs of most known fungal pathogen-host interaction proteins, stress response circuits and putative effectors of the small secreted protein type. The need to adhere to and penetrate the host cuticle led to a selective radiation of surface proteins and hydrolytic enzymes. Although the endoparasite has a simplified secondary metabolome, it produces a novel peptaibiotic family that shows antibacterial, antifungal and nematicidal activities. Our analyses emphasize the basic malleability of the D. coniospora genome: loss of genes advantageous for the saprophytic lifestyle; modulation of elements that its cohort species utilize for entomopathogenesis; and expansion of protein families necessary for the nematode endoparasitic lifestyle.

Indexed as

Genome, FungalTranscriptomeAdaptation, PhysiologicalAnimalsFungal ProteinsHost-Pathogen InteractionsHypocrealesNematodaFungal Proteins

Identifiers

PMID26975455
PMCPMC4792172
OpenAlexW2302139368

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.