ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2016
Sequencing and comparative analyses of the genomes of zoysiagrasses.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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43 citing papers in PubMed, 148 citations in OpenAlex.
- Genetic analyses of leaf traits in an interspecific Zoysia japonica × Zoysia matrella FThe plant genome · 2026Article
- A Near Gap-Free Haplotype-Resolved Genome Assembly of Zoysia japonica Uncovers Intra-Subgenomic Gene Expression and Regulatory Variation.Plant biotechnology journal · 2026Article
- A whole-genome assembly of St. Augustinegrass and visualizing diversity within the species.The plant genome · 2026Article
- Recurrent polyploidy and descending dysploidy as plant genome shapers: Insights from Sporobolus (Chloridoideae, Poaceae) genomes.PloS one · 2026Article
- Two mutations in the same MYC-bHLH transcription factor cause segregation of purple coloration of stolons and seed heads inHorticulture research · 2025Article
- Genetic and genomic resources for turfgrasses: status, applications, and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Chromosome-level genome of Zoysia sinica in the intertidal zone reveals genomic insights into waterlogging stress adaptation.The plant genome · 2025Article
- Chromosome-level Genome Assembly of the Halophytic Turfgrass Zoysia macrostachya.Scientific data · 2025Article
- Chromosome-scale genome assembly of Zoysia japonica uncovers cold tolerance candidate genes.Scientific data · 2025Article
- Integration of ATAC-seq and RNA-seq reveals the dynamics of chromatin accessibility and gene expression in zoysiagrass response to drought.Plant cell reports · 2025Article
- Genome-Wide Identification and Expression Analysis of the Cyclic Nucleotide-Gated Channel Gene Family inInternational journal of molecular sciences · 2024Article
- Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages.Nature communications · 2024Article
- Genome-Wide Identification and Expression Analysis of thePlants (Basel, Switzerland) · 2024Article
- CRISPR/Cas9-mediated knockout of NYC1 gene enhances chlorophyll retention and reduces tillering in Zoysia matrella (L.) Merrill.Plant cell reports · 2024Article
- Genome-wide identification, expression analysis, and transcriptome analysis of the IAA gene family in Zoysia japonica.Molecular biology reports · 2023Article
- Comprehensive transcriptomic analysis of age-, dark-, and salt-induced senescence reveals underlying mechanisms and key regulators of leaf senescence inFrontiers in plant science · 2023Article
- GGDB: A Grameneae genome alignment database of homologous genes hierarchically related to evolutionary events.Plant physiology · 2022Article
- Comparative genomics reveals the molecular mechanism of salt adaptation for zoysiagrasses.BMC plant biology · 2022Article
- Expression of a ChlorophyllInternational journal of molecular sciences · 2022Article
- Single-molecule long-read sequencing analysis improves genome annotation and sheds new light on the transcripts and splice isoforms of Zoysia japonica.BMC plant biology · 2022Article
Corrections and comments
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Authors and funding
18 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Zoysiais a warm-season turfgrass, which comprises 11 allotetraploid species (2n= 4x= 40), each possessing different morphological and physiological traits. To characterize the genetic systems of Zoysia plants and to analyse their structural and functional differences in individual species and accessions, we sequenced the genomes of Zoysia species using HiSeq and MiSeq platforms. As a reference sequence of Zoysia species, we generated a high-quality draft sequence of the genome of Z. japonica accession 'Nagirizaki' (334 Mb) in which 59,271 protein-coding genes were predicted. In parallel, draft genome sequences of Z. matrella 'Wakaba' and Z. pacifica 'Zanpa' were also generated for comparative analyses. To investigate the genetic diversity among the Zoysia species, genome sequence reads of three additional accessions, Z. japonica'Kyoto', Z. japonica'Miyagi' and Z. matrella'Chiba Fair Green', were accumulated, and aligned against the reference genome of 'Nagirizaki' along with those from 'Wakaba' and 'Zanpa'. As a result, we detected 7,424,163 single-nucleotide polymorphisms and 852,488 short indels among these species. The information obtained in this study will be valuable for basic studies on zoysiagrass evolution and genetics as well as for the breeding of zoysiagrasses, and is made available in the 'Zoysia Genome Database' at http://zoysia.kazusa.or.jp.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.