Evidence map›Paper›PMID 26974813›Full record

ArticleNature chemical biology2016

Methyl-esterified 3-hydroxybutyrate oligomers protect bacteria from hydroxyl radicals.

Janne J Koskimäki, Marena Kajula, Juho Hokkanen, Emmi-Leena Ihantola, Jong H Kim, Heidi Hautajärvi, Elina Hankala, Marko Suokas, Johanna Pohjanen, Olga Podolich and 6 more

Abstract read
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In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 71 citations in OpenAlex.

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  13. Biosynthesis of polyhydroxybutyrate byFrontiers in plant science · 2024
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  20. Enhanced Production of (Microorganisms · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 4 countries.

Janne J KoskimäkiGenetics and Physiology, University of Oulu, Oulu, Finland.ORCID http://orcid.org/0000-0001-8241-3500
Marena KajulaDepartment of Chemistry, University of Oulu, Oulu, Finland.
Juho HokkanenAdmescope Ltd., Oulu, Finland.
Emmi-Leena IhantolaGenetics and Physiology, University of Oulu, Oulu, Finland.
Jong H KimFoodborne Toxin Detection and Prevention Research Unit, Western Regional Research Center, Agricultural Research Service, Department of Agriculture, Albany, California, USA.
Heidi HautajärviAdmescope Ltd., Oulu, Finland.
Elina HankalaGenetics and Physiology, University of Oulu, Oulu, Finland.
Marko SuokasGenetics and Physiology, University of Oulu, Oulu, Finland.
Johanna PohjanenGenetics and Physiology, University of Oulu, Oulu, Finland.
Olga PodolichInstitute of Molecular Biology and Genetics of the National Academy of Sciences Ukraine, Kyiv, Ukraine.
Natalia KozyrovskaInstitute of Molecular Biology and Genetics of the National Academy of Sciences Ukraine, Kyiv, Ukraine.
Ari TurpeinenDepartment of Chemistry, University of Oulu, Oulu, Finland.
Mirva PääkkönenDepartment of Chemistry, University of Oulu, Oulu, Finland.
Sampo MattilaDepartment of Chemistry, University of Oulu, Oulu, Finland.
Bruce C CampbellFoodborne Toxin Detection and Prevention Research Unit, Western Regional Research Center, Agricultural Research Service, Department of Agriculture, Albany, California, USA.
Anna Maria PirttiläGenetics and Physiology, University of Oulu, Oulu, Finland.
University of Oulu · FIMachida Endoscope (Japan) · JPAgricultural Research Service · USInstitute of Molecular Biology and Genetics · UAUniversity of Eastern Finland · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria rely mainly on enzymes, glutathione and other low-molecular weight thiols to overcome oxidative stress. However, hydroxyl radicals are the most cytotoxic reactive oxygen species, and no known enzymatic system exists for their detoxification. We now show that methyl-esterified dimers and trimers of 3-hydroxybutyrate (ME-3HB), produced by bacteria capable of polyhydroxybutyrate biosynthesis, have 3-fold greater hydroxyl radical-scavenging activity than glutathione and 11-fold higher activity than vitamin C or the monomer 3-hydroxybutyric acid. We found that ME-3HB oligomers protect hypersensitive yeast deletion mutants lacking oxidative stress-response genes from hydroxyl radical stress. Our results show that phaC and phaZ, encoding polymerase and depolymerase, respectively, are activated and polyhydroxybutyrate reserves are degraded for production of ME-3HB oligomers in bacteria infecting plant cells and exposed to hydroxyl radical stress. We found that ME-3HB oligomer production is widespread, especially in bacteria adapted to stressful environments. We discuss how ME-3HB oligomers could provide opportunities for numerous applications in human health.

Indexed as

AntioxidantsBacterial ProteinsGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHydrogen PeroxideHydroxybutyratesHydroxyl RadicalIronMethylobacterium extorquensMolecular StructurePinusPlant DiseasesSeedlingsAntioxidantsBacterial ProteinsHydrogen PeroxideHydroxybutyratesHydroxyl RadicalIron

Identifiers

PMID26974813
OpenAlexW2298251271

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.