Evidence map›Paper›PMID 26973706›Full record

ArticlePlant methods2016

Protocol: transient expression system for functional genomics in the tropical tree Theobroma cacao L.

Andrew S Fister, Zi Shi, Yufan Zhang, Emily E Helliwell, Siela N Maximova, Mark J Guiltinan

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
15.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 51 citations in OpenAlex.

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  17. International journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Andrew S FisterThe Huck Institutes of the Life Sciences, The Pennsylvania State University, 422 Life Sciences Building, University Park, PA 16802 USA.
Zi ShiCenter for Applied Genetic Technologies, University of Georgia, Athens, GA 30602 USA.
Yufan ZhangDepartment of Electrical Engineering, Princeton University, Princeton, NJ 08544 USA.
Emily E HelliwellDepartment of Botany and Plant Pathology, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331 USA.
Siela N MaximovaThe Huck Institutes of the Life Sciences, The Pennsylvania State University, 422 Life Sciences Building, University Park, PA 16802 USA ; The Department of Plant Science, The Pennsylvania State University, University Park, PA 16802 USA.
Mark J GuiltinanThe Huck Institutes of the Life Sciences, The Pennsylvania State University, 422 Life Sciences Building, University Park, PA 16802 USA ; The Department of Plant Science, The Pennsylvania State University, University Park, PA 16802 USA.ORCID 0000-0003-0018-9846
Pennsylvania State University · USOregon State University · USPrinceton University · USUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTheobroma cacao L., the source of cocoa, is a crop of significant economic value around the world. To facilitate the study of gene function in cacao we have developed a rapid Agrobacterium-mediated transient genetic transformation protocol. Here we present a detailed methodology for our transformation assay, as well as an assay for inoculation of cacao leaves with pathogens.

resultsAgrobacterium tumefaciens cultures are induced then vacuum-infiltrated into cacao leaves. Transformation success can be gauged 48 h after infiltration by observation of green fluorescent protein and by qRT-PCR. We clarify the characteristics of cacao leaf stages and demonstrate that our strategy efficiently transforms leaves of developmental stage C. The transformation protocol has high efficacy in stage C leaves of four of eight tested genotypes. We also present the functional analysis of cacao chitinase overexpression using the transient transformation system, which resulted in decreased pathogen biomass and lesion size after infection with Phytophthora tropicalis.

conclusionsLeaves expressing transgenes of interest can be used in subsequent functional genetic assays such as pathogen bioassay, metabolic analysis, gene expression analysis etc. This transformation protocol can be carried out in 1 day, and the transgenes expressing leaf tissue can be maintained in petri dishes for 5-7 days, allowing sufficient time for performance of additional downstream gene functional analysis. Application of these methods greatly increases the rapidity with which candidate genes with roles in defense can be tested.

Identifiers

PMID26973706
PMCPMC4788949
OpenAlexW2295237430

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.