Evidence map›Paper›PMID 26973180›Full record

ArticleCellular and molecular life sciences : CMLS2016

Comparative genomics of drug resistance in Trypanosoma brucei rhodesiense.

Fabrice E Graf, Philipp Ludin, Christian Arquint, Remo S Schmidt, Nadia Schaub, Christina Kunz Renggli, Jane C Munday, Jessica Krezdorn, Nicola Baker, David Horn and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Drug resistance in animal trypanosomiases: Epidemiology, mechanisms and control strategies.International journal for parasitology. Drugs and drug resistance · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Fabrice E GrafSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland.
Philipp LudinSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland.
Christian ArquintSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland.
Remo S SchmidtSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland.
Nadia SchaubSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland.
Christina Kunz RenggliSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland.
Jane C MundayInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G12 8TA, UK.
Jessica KrezdornInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G12 8TA, UK.
Nicola BakerBiological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
David HornBiological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
Oliver BalmerSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland.
Adalgisa CacconeDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.
Harry P de KoningInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G12 8TA, UK.
Pascal MäserSwiss Tropical and Public Health Institute, Socinstrasse 57, 4051, Basel, Switzerland. pascal.maeser@unibas.ch.ORCID 0000-0003-3122-1941
Swiss Tropical and Public Health Institute · CHUniversity of Glasgow · GBUniversity of Dundee · GBYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Next generation sequencing of East African trypanosomes to expand the molecular eR21AI094615 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP, CACCONE, ADALGISA · 2011 to 2012
$459k
Medical Research Council MR/K000500/1NCATS NIH HHS UL1 TR001863NIAID NIH HHS R21 AI094615Wellcome TrustWellcome Trust 100320/Z/12/Z
6 · The paper itself

Abstract

Trypanosoma brucei rhodesiense is one of the causative agents of human sleeping sickness, a fatal disease that is transmitted by tsetse flies and restricted to Sub-Saharan Africa. Here we investigate two independent lines of T. b. rhodesiense that have been selected with the drugs melarsoprol and pentamidine over the course of 2 years, until they exhibited stable cross-resistance to an unprecedented degree. We apply comparative genomics and transcriptomics to identify the underlying mutations. Only few mutations have become fixed during selection. Three genes were affected by mutations in both lines: the aminopurine transporter AT1, the aquaporin AQP2, and the RNA-binding protein UBP1. The melarsoprol-selected line carried a large deletion including the adenosine transporter gene AT1, whereas the pentamidine-selected line carried a heterozygous point mutation in AT1, G430R, which rendered the transporter non-functional. Both resistant lines had lost AQP2, and both lines carried the same point mutation, R131L, in the RNA-binding motif of UBP1. The finding that concomitant deletion of the known resistance genes AT1 and AQP2 in T. b. brucei failed to phenocopy the high levels of resistance of the T. b. rhodesiense mutants indicated a possible role of UBP1 in melarsoprol-pentamidine cross-resistance. However, homozygous in situ expression of UBP1-Leu(131) in T. b. brucei did not affect the sensitivity to melarsoprol or pentamidine.

Indexed as

Genome, ProtozoanAmino Acid SequenceAquaporinsComparative Genomic HybridizationDNA, ProtozoanDrug ResistanceHeterozygoteHumansMaleMelarsoprolNucleoside Transport ProteinsParasitic Sensitivity TestsPentamidinePhenotypePolymorphism, Single NucleotideProtozoan ProteinsAquaporinsDNA, ProtozoanMelarsoprolNucleoside Transport ProteinsPentamidineProtozoan ProteinsRNA-Binding ProteinsTrypanocidal AgentsAfrican trypanosomesAquaporinMelarsoprolPentamidinePurine permeaseRNA-binding protein

Identifiers

PMID26973180
PMCPMC4967103
OpenAlexW2300490256

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.