Evidence map›Paper›PMID 26972811›Full record

ReviewNature reviews. Microbiology2016

The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism.

Peter Spanogiannopoulos, Elizabeth N Bess, Rachel N Carmody, Peter J Turnbaugh

Abstract readReview
In one paragraph

Review in Nature reviews. Microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 358 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
358citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

358 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Roles of the gut microbiome in weight management.Nature reviews. Microbiology · 2023
    Pooled it
  2. Trial
  3. Trial
  4. Review
  5. Gut microbes · 2026
    Article
  6. Article
  7. Review
  8. Review
  9. Gut microbiota modulation of systemic immunity and cancer immunotherapy: mechanisms, evidence, and therapeutic implications.Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2026
    Review
  10. Article
  11. Folic acid deficiency in cancer therapy: a review of chemotherapy-induced malabsorption and supportive care strategies.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2026
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. New Personalized Medicine Model for Medication Management.Journal of personalized medicine · 2026
    Review

298 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Peter SpanogiannopoulosDepartment of Microbiology &Immunology, George Williams Hooper Foundation, University of California San Francisco, 513 Parnassus Avenue, San Francisco, California 94143, USA.
Elizabeth N BessDepartment of Microbiology &Immunology, George Williams Hooper Foundation, University of California San Francisco, 513 Parnassus Avenue, San Francisco, California 94143, USA.
Rachel N CarmodyDepartment of Microbiology &Immunology, George Williams Hooper Foundation, University of California San Francisco, 513 Parnassus Avenue, San Francisco, California 94143, USA.
Peter J TurnbaughDepartment of Microbiology &Immunology, George Williams Hooper Foundation, University of California San Francisco, 513 Parnassus Avenue, San Francisco, California 94143, USA.

Funding

UCSF Nutrition Obesity Research CenterP30DK098722 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHRISTIAN VAISSE · 2015 to 2026
$14.6M
Predicting and preventing drug metabolism by the human gut microbiomeR01HL122593 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Peter James Turnbaugh · 2016 to 2026
$5.7M
Health promoting effects of high-polyphenol foods may be mediated through gut microbiomeR01AT008618 · NCCIH · RUTGERS, THE STATE UNIV OF N.J. · PI RASKIN, ILYA · 2015 to 2019
$2.2M
Gut microbial promotion of energy gain from processed dietsF32DK101154 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CARMODY, RACHEL NAOMI · 2013 to 2016
$141k
NCCIH NIH HHS R01 AT008618NCCIH NIH HHS R01AT008618NHLBI NIH HHS R01 HL122593NHLBI NIH HHS R01HL122593NIDDK NIH HHS F32 DK101154NIDDK NIH HHS F32DK101154NIDDK NIH HHS P30 DK098722
6 · The paper itself

Abstract

Although the importance of human genetic polymorphisms in therapeutic outcomes is well established, the role of our 'second genome' (the microbiome) has been largely overlooked. In this Review, we highlight recent studies that have shed light on the mechanisms that link the human gut microbiome to the efficacy and toxicity of xenobiotics, including drugs, dietary compounds and environmental toxins. Continued progress in this area could enable more precise tools for predicting patient responses and for the development of a new generation of therapeutics based on, or targeted at, the gut microbiome. Indeed, the admirable goal of precision medicine may require us to first understand the microbial pharmacists within.

Indexed as

Gastrointestinal MicrobiomeAnimalsDietDrug TherapyHumansImmune SystemMetabolomeMetagenomePharmaceutical PreparationsPharmacogeneticsXenobioticsPharmaceutical PreparationsXenobiotics

Identifiers

PMID26972811
PMCPMC5243131

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.