Evidence map›Paper›PMID 26969241›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2016

Comparative molecular epidemiology of two closely related coronaviruses, bovine coronavirus (BCoV) and human coronavirus OC43 (HCoV-OC43), reveals a different evolutionary pattern.

Nathalie Kin, Fabien Miszczak, Laure Diancourt, Valérie Caro, François Moutou, Astrid Vabret, Meriadeg Ar Gouilh

Open access · greenAbstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 55 citations in OpenAlex.

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  12. Epidemiologic investigation and genetic characterization of canine respiratory coronavirus in the Southeastern United States.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nathalie KinNormandie Université, 14032 Caen, France; Université de Caen, Unité de Recherche Risques Microbiens (U2RM), F-14000 Caen, France. Electronic address: nathalie.kin@unicaen.fr.
Fabien MiszczakNormandie Université, 14032 Caen, France; Université de Caen, Unité de Recherche Risques Microbiens (U2RM), F-14000 Caen, France; Laboratoire de Virologie, Centre Hospitalo-Universitaire de Caen, F-14033 Caen, France.
Laure DiancourtInstitut Pasteur, Environment and Infectious Risks Research and Expertise Unit, F-75015 Paris, France.
Valérie CaroInstitut Pasteur, Environment and Infectious Risks Research and Expertise Unit, F-75015 Paris, France.
François MoutouANSES, Boulogne Billancourt, F-92012, France.
Astrid VabretNormandie Université, 14032 Caen, France; Université de Caen, Unité de Recherche Risques Microbiens (U2RM), F-14000 Caen, France; Laboratoire de Virologie, Centre Hospitalo-Universitaire de Caen, F-14033 Caen, France.
Meriadeg Ar GouilhNormandie Université, 14032 Caen, France; Université de Caen, Unité de Recherche Risques Microbiens (U2RM), F-14000 Caen, France; Institut Pasteur, Environment and Infectious Risks Research and Expertise Unit, F-75015 Paris, France.
Institut Pasteur · FRNormandie Université · FRLaboratoire Vision Action Cognition · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bovine coronaviruses (BCoVs) are widespread around the world and cause enteric or respiratory infections among cattle. The current study includes 13 samples from BCoVs collected in Normandy during an 11-year period (from 2003 to 2014), 16 French HCoV-OC43s, and 113 BCoVs or BCoVs-like sequence data derived from partial or complete genome sequences available on GenBank. According to a genotyping method developed previously for HCoV-OC43, BCoVs and BCoVs-like are distributed on three main sub-clusters named C1, C2, and C3. Sub-cluster C1 includes BCoVs and BCoVs-like from America and Asia. Sub-cluster C2 includes BCoVs from Europe. Sub-cluster C3 includes prototype, vaccine, or attenuated BCoV strains. The phylogenetic analyses revealed the monophyletic status of the BCoVs from France reported here for the first time. Moreover, BCoV exhibits a relative genetic stability when compared to HCoV-OC43 we previously described from the same region. The numerous recombination detected between HCoV-OC43 were much less frequent for BCoV. The analysis points thus to the influence of different evolutive constraints in these two close groups.

Indexed as

AnimalsCattleComputational BiologyCoronavirusCoronavirus, BovineCoronavirus InfectionsCoronavirus OC43, HumanEvolution, MolecularFranceGenes, ViralGenome, ViralGenotypeHumansMolecular EpidemiologyMolecular TypingPhylogenyRNA, ViralBovine coronavirusEpidemiologyEvolutionGenotypingHuman coronavirus OC43RecombinationRespiratory infection

Identifiers

PMID26969241
PMCPMC7106199
OpenAlexW2294093052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.