Evidence map›Paper›PMID 26967054›Full record

ArticleOncotarget2016

Comparative analysis of human and mouse transcriptomes of Th17 cell priming.

Soile Tuomela, Sini Rautio, Helena Ahlfors, Viveka Öling, Verna Salo, Ubaid Ullah, Zhi Chen, Saara Hämälistö, Subhash K Tripathi, Tarmo Äijö and 6 more

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Long noncoding RNA LIRIL2R modulates FOXP3 levels and suppressive function of human CD4Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Soile TuomelaTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Sini RautioDepartment of Computer Science, Aalto University, Espoo, Finland.
Helena AhlforsDivision of Molecular Immunology, MRC National Institute for Medical Research, London, United Kingdom.
Viveka ÖlingTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Verna SaloTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Ubaid UllahTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Zhi ChenTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Saara HämälistöTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Subhash K TripathiTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Tarmo ÄijöDepartment of Computer Science, Aalto University, Espoo, Finland.
Omid RasoolTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Hayssam SoueidanComputational Cancer Biology, Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Lodewyk WesselsComputational Cancer Biology, Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Brigitta StockingerDivision of Molecular Immunology, MRC National Institute for Medical Research, London, United Kingdom.
Harri LähdesmäkiTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Riitta LahesmaaTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Åbo Akademi University · FIUniversity of Turku · FIAalto University · FIThe Netherlands Cancer Institute · NLTurku Centre for Biotechnology · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uncontrolled Th17 cell activity is associated with cancer and autoimmune and inflammatory diseases. To validate the potential relevance of mouse models of targeting the Th17 pathway in human diseases we used RNA sequencing to compare the expression of coding and non-coding transcripts during the priming of Th17 cell differentiation in both human and mouse. In addition to already known targets, several transcripts not previously linked to Th17 cell polarization were found in both species. Moreover, a considerable number of human-specific long non-coding RNAs were identified that responded to cytokines stimulating Th17 cell differentiation. We integrated our transcriptomics data with known disease-associated polymorphisms and show that conserved regulation pinpoints genes that are relevant to Th17 cell-mediated human diseases and that can be modelled in mouse. Substantial differences observed in non-coding transcriptomes between the two species as well as increased overlap between Th17 cell-specific gene expression and disease-associated polymorphisms underline the need of parallel analysis of human and mouse models. Comprehensive analysis of genes regulated during Th17 cell priming and their classification to conserved and non-conserved between human and mouse facilitates translational research, pointing out which candidate targets identified in human are worth studying by using in vivo mouse models.

Indexed as

Polymorphism, Single NucleotideTranscriptomeAnimalsBiomarkersCells, CulturedHumansInfant, NewbornMiceMice, Inbred C57BLSequence Analysis, RNATh17 CellsBiomarkerscomparative analysis of human and mousedisease-associated SNPsImmune responseImmunityImmunology and Microbiology SectionlncRNARNA-seqTh17 cell priming

Identifiers

PMID26967054
PMCPMC4924651
OpenAlexW2308667466

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.