Evidence map›Paper›PMID 26966995›Full record

ArticleJournal of visualized experiments : JoVE2016

In Situ Characterization of Hydrated Proteins in Water by SALVI and ToF-SIMS.

Jiachao Yu, Yufan Zhou, Xin Hua, Zihua Zhu, Xiao-Ying Yu

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. The In Vivo Selection Method in Breast Cancer Metastasis.International journal of molecular sciences · 2021
    Review
  2. Article
  3. Article
  4. Improving the Molecular Ion Signal Intensity for In Situ Liquid SIMS Analysis.Journal of the American Society for Mass Spectrometry · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jiachao YuFundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory.
Yufan ZhouWiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory.
Xin HuaFundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory.
Zihua ZhuWiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory.
Xiao-Ying YuFundamental & Computational Sciences Directorate, Pacific Northwest National Laboratory; xiaoying.yu@pnnl.gov.
Pacific Northwest National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This work demonstrates in situ characterization of protein biomolecules in the aqueous solution using the System for Analysis at the Liquid Vacuum Interface (SALVI) and time-of-flight secondary ion mass spectrometry (ToF-SIMS). The fibronectin protein film was immobilized on the silicon nitride (SiN) membrane that forms the SALVI detection area. During ToF-SIMS analysis, three modes of analysis were conducted including high spatial resolution mass spectrometry, two-dimensional (2D) imaging, and depth profiling. Mass spectra were acquired in both positive and negative modes. Deionized water was also analyzed as a reference sample. Our results show that the fibronectin film in water has more distinct and stronger water cluster peaks compared to water alone. Characteristic peaks of amino acid fragments are also observable in the hydrated protein ToF-SIMS spectra. These results illustrate that protein molecule adsorption on a surface can be studied dynamically using SALVI and ToF-SIMS in the liquid environment for the first time.

Indexed as

AdsorptionFibronectinsProteinsSilicon CompoundsSpectrometry, Mass, Secondary IonVacuumWaterFibronectinsProteinsSilicon Compoundssilicon nitrideWater

Identifiers

PMID26966995
PMCPMC4828166
OpenAlexW2286123276

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.