Evidence map›Paper›PMID 26965372›Full record

ArticleDevelopment (Cambridge, England)2016

Single-stranded DNA binding proteins are required for LIM complexes to induce transcriptionally active chromatin and specify spinal neuronal identities.

Bora Lee, Seunghee Lee, Alan D Agulnick, Jae W Lee, Soo-Kyung Lee

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Rotational symmetry of the structured Chip/LDB-SSDP core module of the Wnt enhanceosome.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Review
  8. Disparate binding kinetics by an intrinsically disordered domain enables temporal regulation of transcriptional complex formation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Bora LeeNeuroscience Section, Papé Family Pediatric Research Institute, Department of Pediatrics, Oregon Health & Science University, Portland, OR 97239, USA Department of Cell, Developmental Biology and Cancer Biology, Oregon Health and Science University, Portland, OR 97239, USA.
Seunghee LeeCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Seoul National University, Seoul, Korea.
Alan D AgulnickViacyte, Inc., San Diego, CA 92121, USA.
Jae W LeeNeuroscience Section, Papé Family Pediatric Research Institute, Department of Pediatrics, Oregon Health & Science University, Portland, OR 97239, USA Department of Cell, Developmental Biology and Cancer Biology, Oregon Health and Science University, Portland, OR 97239, USA.
Soo-Kyung LeeNeuroscience Section, Papé Family Pediatric Research Institute, Department of Pediatrics, Oregon Health & Science University, Portland, OR 97239, USA Department of Cell, Developmental Biology and Cancer Biology, Oregon Health and Science University, Portland, OR 97239, USA Vollum Institute, Oregon Health and Science University, Portland, OR 97239, USA leesoo@ohsu.edu.
Oregon Health & Science University · USVollum Institute · USViaCyte (United States) · US

Funding

LIM-HD/bHLH Combinatorial Code in MotoneuronsR01NS054941 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEE, SOO-KYUNG · 2006 to 2015
$4.3M
Regulation Code by Nuclear Receptor Coactivator ASC-2R01DK064678 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEE, JAE W · 2004 to 2016
$4.3M
Development of Hypothalamic Neurons That Control Energy BalanceR01DK103664 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI LEE, JAE W · 2014 to 2017
$2.2M
NIDDK NIH HHS R01 DK064678NIDDK NIH HHS R01 DK103664NINDS NIH HHS R01 NS054941
6 · The paper itself

Abstract

LIM homeodomain factors regulate the development of many cell types. However, transcriptional coactivators that mediate their developmental function remain poorly defined. To address these, we examined how two related NLI-dependent LIM complexes, which govern the development of spinal motor neurons and V2a interneurons, activate the transcription in the embryonic spinal cord. We found that single-stranded DNA-binding proteins are recruited to these LIM complexes via NLI, and enhance their transcriptional activation potential. Ssdp1 and Ssdp2 (Ssdp1/2) are highly expressed in the neural tube and promote motor neuron differentiation in the embryonic spinal cord and P19 stem cells. Inhibition of Ssdp1/2 activity in mouse and chick embryos suppresses the generation of motor neurons and V2a interneurons. Furthermore, Ssdp1/2 recruit histone-modifying enzymes to the motor neuron-specifying LIM complex and trigger acetylation and lysine 4 trimethylation of histone H3, which are well-established chromatin marks for active transcription. Our results suggest that Ssdp1/2 function as crucial transcriptional coactivators for LIM complexes to specify spinal neuronal identities during development.

Indexed as

Amino Acid SequenceAnimalsBody PatterningChick EmbryoChromatinDNA-Binding ProteinsEmbryo, MammalianHumansInterneuronsLIM-Homeodomain ProteinsMiceMotor NeuronsMutationNeuronsProtein BindingRatsChromatinDNA-Binding ProteinsLIM-Homeodomain ProteinsTrans-ActivatorsIsl1Ldb1Lhx3Motor neuronNLISpinal cordV2a-interneuron

Identifiers

PMID26965372
PMCPMC4874481
OpenAlexW2394993185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.