Evidence map›Paper›PMID 26965260›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2016

Purification and Functional Reconstitution of Box H/ACA Ribonucleoprotein Particles.

Chao Huang, Guowei Wu, Yi-Tao Yu

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Chao HuangProcess Science Downstream, Bristol-Myers Squibb Company, 6000 Thompson Road, East Syracuse, NY, 13057, USA.
Guowei WuDepartment of Cellular and Molecular Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-065, USA.
Yi-Tao YuDepartment of Biochemistry and Biophysics, Center for RNA Biology, University of Rochester Medical Center, 601 Elmwood Avenue, Rochester, NY, 14642, USA. yitao_yu@urmc.rochester.edu.
Bristol-Myers Squibb (United States) · USUniversity of California, San Diego · USUniversity of Rochester Medical Center · US

Funding

Expanding the genetic code by targeted pseudouridylationR01GM104077 · NIGMS · UNIVERSITY OF ROCHESTER · PI YU, YI-TAO · 2012 to 2015
$1.2M
Regulation of telomerase activity and aging by 2'-O-methylation in telomerase RNAR21AG039559 · NIA · UNIVERSITY OF ROCHESTER · PI YU, YI-TAO · 2012 to 2013
$412k
NIA NIH HHS AG039559NIA NIH HHS R21 AG039559NIGMS NIH HHS GM104077NIGMS NIH HHS R01 GM104077
6 · The paper itself

Abstract

Pseudouridylation is the most abundant and widespread RNA modification, and it plays an important role in modulating the structure and function of RNA. In eukaryotes and archaea, RNA pseudouridylation is catalyzed largely by box H/ACA ribonucleoproteins (RNPs), a distinct group of RNA-protein complexes each consisting of a unique RNA and four common proteins. The RNA component of the complex serves as a guide that base-pairs with its substrate RNA and specifies the target uridine to be modified. In order to systematically study the function and mechanism of pseudouridylation, it is desirable to have a reconstitution system in which biochemically purified/reconstituted box H/ACA RNPs are capable of introducing pseudouridines into an RNA at any target site. Here, we describe a method for the reconstitution of functional box H/ACA RNPs using designer box H/ACA guide RNAs, which in principle can be adopted to reconstitute other RNA-protein complexes as well.

Indexed as

Cell Culture TechniquesFungal ProteinsImmunoprecipitationPseudouridineRibonucleoproteinsRNA, Guide, CRISPR-Cas SystemsRNA Processing, Post-TranscriptionalTranscription, GeneticYeastsFungal ProteinsPseudouridineRibonucleoproteinsRNA, Guide, CRISPR-Cas SystemsBox H/ACA RNPImmunoprecipitationPseudouridylationReconstitutionRNA modification

Identifiers

PMID26965260
PMCPMC5702500
OpenAlexW2470283182

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.