Evidence map›Paper›PMID 26963285›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2016

Novel mutations in LRP6 highlight the role of WNT signaling in tooth agenesis.

Charlotte W Ockeloen, Kriti D Khandelwal, Karoline Dreesen, Kerstin U Ludwig, Robert Sullivan, Iris A L M van Rooij, Michelle Thonissen, Steven Swinnen, Milien Phan, Federica Conte and 32 more

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Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 80 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Dissecting the Genetic Contribution of Tooth Agenesis.International journal of molecular sciences · 2025
    Review
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  19. NovelJournal of personalized medicine · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 7 institutions in 5 countries.

Charlotte W Ockeloen *Department of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Kriti D Khandelwal *Department of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Karoline Dreesen *Department of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Kerstin U LudwigInstitute of Human Genetics, Department of Genomics, Life & Brain Center, University of Bonn, D-53127, Bonn, Germany.
Robert SullivanFaculty of Life Sciences and Dental School, University of Manchester, M13 9PT, Manchester, United Kingdom.
Iris A L M van RooijDepartment for Health Evidence, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Michelle ThonissenDepartment of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Steven SwinnenDepartment of Oral Health Sciences, University Hospitals KU Leuven, 3000, Leuven, Belgium.
Milien PhanDepartment of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Federica ConteRadboud University, Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences, 6500 HB, Nijmegen, The Netherlands.
Nina IshorstInstitute of Human Genetics, Department of Genomics, Life & Brain Center, University of Bonn, D-53127, Bonn, Germany.
Christian GilissenDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Laury RoaFuentesDepartment of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Maartje van de VorstDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Arjen HenkesDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Marloes SteehouwerDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Ellen van BeusekomDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Marjon BloemenDepartment of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Bruno VankeirsbilckDNA facility, Center for Human Genetics, University Hospitals KU Leuven, 3000, Leuven, Belgium.
Stefaan BergéDepartment of Oral and Maxillofacial Surgery, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Greet HensCleft Lip Palate Team and AGORA-Support Group, Departments of Otorhinolaryngology and Head and Neck Surgery, Maxillofacial Surgery, and Orthodontics, University Hospitals KU Leuven, 3000, Leuven, Belgium.
Joseph SchoenaersCleft Lip Palate Team and AGORA-Support Group, Departments of Otorhinolaryngology and Head and Neck Surgery, Maxillofacial Surgery, and Orthodontics, University Hospitals KU Leuven, 3000, Leuven, Belgium.
Vincent Vander PoortenCleft Lip Palate Team and AGORA-Support Group, Departments of Otorhinolaryngology and Head and Neck Surgery, Maxillofacial Surgery, and Orthodontics, University Hospitals KU Leuven, 3000, Leuven, Belgium.
Jasmien RoosenboomCleft Lip Palate Team and AGORA-Support Group, Departments of Otorhinolaryngology and Head and Neck Surgery, Maxillofacial Surgery, and Orthodontics, University Hospitals KU Leuven, 3000, Leuven, Belgium.
An VerdonckDepartment of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Koen DevriendtCleft Lip Palate Team and AGORA-Support Group, Departments of Otorhinolaryngology and Head and Neck Surgery, Maxillofacial Surgery, and Orthodontics, University Hospitals KU Leuven, 3000, Leuven, Belgium.
Nel RoeleveldtDepartment for Health Evidence, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Shalini N JhangianiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, Texas, USA.
Lisenka E L M VissersDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, Texas, USA.
Joep de LigtHubrecht Institute, KNAW and University Medical Center Utrecht, 3508 AD, Utrecht, The Netherlands.
Johannes W Von den HoffDepartment of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Rolph PfundtDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Han G BrunnerDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Huiqing ZhouDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Jill DixonFaculty of Life Sciences and Dental School, University of Manchester, M13 9PT, Manchester, United Kingdom.
Elisabeth MangoldInstitute of Human Genetics, Biomedical Center, University of Bonn, D-53127, Bonn, Germany.
Hans van BokhovenDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Michael J DixonFaculty of Life Sciences and Dental School, University of Manchester, M13 9PT, Manchester, United Kingdom.
Tjitske KleefstraDepartment of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Alexander Hoischen *Department of Human Genetics, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Carine E L Carels *Department of Orthodontics and Craniofacial Biology, Radboud University Medical Center, 6500 HB, Nijmegen, The Netherlands.
Radboud University Nijmegen · NLKU Leuven · BEUniversity Dental Hospital of Manchester · GBUniversity of Bonn · DEBaylor College of Medicine · USCenter for Human Genetics · USUniversity Medical Center Utrecht · NL

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
Medical Research Council G0901539Medical Research Council MR/M012174/1NHGRI NIH HHS U54 HG006542NHGRI NIH HHS UM1 HG006542NINDS NIH HHS R01 NS058529
6 · The paper itself

Abstract

purposeWe aimed to identify a novel genetic cause of tooth agenesis (TA) and/or orofacial clefting (OFC) by combining whole-exome sequencing (WES) and targeted resequencing in a large cohort of TA and OFC patients.

methodsWES was performed in two unrelated patients: one with severe TA and OFC and another with severe TA only. After deleterious mutations were identified in a gene encoding low-density lipoprotein receptor-related protein 6 (LRP6), all its exons were resequenced with molecular inversion probes in 67 patients with TA, 1,072 patients with OFC, and 706 controls.

resultsWe identified a frameshift (c.4594delG, p.Cys1532fs) and a canonical splice-site mutation (c.3398-2A>C, p.?) in LRP6, respectively, in the patient with TA and OFC and in the patient with severe TA only. The targeted resequencing showed significant enrichment of unique LRP6 variants in TA patients but not in nonsyndromic OFC patients. Of the five variants in patients with TA, two affected the canonical splice site and three were missense variants; all variants segregated with the dominant phenotype, and in one case the missense mutation occurred de novo.

conclusionMutations in LRP6 cause TA in humans.Genet Med 18 11, 1158-1162.

Indexed as

Genetic Predisposition to DiseaseAdolescentAnodontiaChildExomeFemaleFrameshift MutationHumansLow Density Lipoprotein Receptor-Related Protein-6MaleMutation, MissensePedigreeSequence Analysis, DNAWnt Signaling PathwayLow Density Lipoprotein Receptor-Related Protein-6LRP6 protein, human

Identifiers

PMID26963285
PMCPMC5018235
OpenAlexW2294599644

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.