Evidence map›Paper›PMID 26963255›Full record

ArticlePloS one2016

Interactive Data Visualization for HIV Cohorts: Leveraging Data Exchange Standards to Share and Reuse Research Tools.

Meridith Blevins, Firas H Wehbe, Peter F Rebeiro, Yanink Caro-Vega, Catherine C McGowan, Bryan E Shepherd, Caribbean, Central, South America Network for HIV Epidemiology (CCASAnet)

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Meridith BlevinsVanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Firas H WehbeVanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Peter F RebeiroVanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Yanink Caro-VegaDepartment of Infectious Diseases, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, Mexico.
Catherine C McGowanVanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Bryan E ShepherdVanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Caribbean, Central, South America Network for HIV Epidemiology (CCASAnet)
Vanderbilt University · USInstituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán · MX

Funding

CCASAnet: Caribbean, Central and South America NetworkU01AI069923 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Pedro Enrique Cahn, Jessica L Castilho · 2006 to 2026
$41.6M
Tennessee CFAR: Implementation of Culturally Responsive Trauma-Informed Care with Youth with HIV in Memphis, TNP30AI110527 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI John Koethe · 2015 to 2026
$27.5M
Statistical Methods for Ordinal Variables in HIV/AIDS StudiesR01AI093234 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Chun Li, Bryan Earl Shepherd · 2011 to 2026
$4.9M
NIAID NIH HHS P30 AI110527NIAID NIH HHS R01 AI093234NIAID NIH HHS U01 AI069923
6 · The paper itself

Abstract

objectiveTo develop and disseminate tools for interactive visualization of HIV cohort data. DESIGN AND

methodsIf a picture is worth a thousand words, then an interactive video, composed of a long string of pictures, can produce an even richer presentation of HIV population dynamics. We developed an HIV cohort data visualization tool using open-source software (R statistical language). The tool requires that the data structure conform to the HIV Cohort Data Exchange Protocol (HICDEP), and our implementation utilized Caribbean, Central and South America network (CCASAnet) data.

resultsThis tool currently presents patient-level data in three classes of plots: (1) Longitudinal plots showing changes in measurements viewed alongside event probability curves allowing for simultaneous inspection of outcomes by relevant patient classes. (2) Bubble plots showing changes in indicators over time allowing for observation of group level dynamics. (3) Heat maps of levels of indicators changing over time allowing for observation of spatial-temporal dynamics. Examples of each class of plot are given using CCASAnet data investigating trends in CD4 count and AIDS at antiretroviral therapy (ART) initiation, CD4 trajectories after ART initiation, and mortality.

conclusionsWe invite researchers interested in this data visualization effort to use these tools and to suggest new classes of data visualization. We aim to contribute additional shareable tools in the spirit of open scientific collaboration and hope that these tools further the participation in open data standards like HICDEP by the HIV research community.

Indexed as

Biomedical ResearchHIV InfectionsInformation DisseminationAmericasCohort StudiesFemaleHumansMale

Identifiers

PMID26963255
PMCPMC4786152
OpenAlexW2294613409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.