Evidence map›Paper›PMID 26963250›Full record

ArticlePloS one2016

Genetic and Functional Analysis of the Biosynthesis of a Non-Ribosomal Peptide Siderophore in Burkholderia xenovorans LB400.

María José Vargas-Straube, Beatriz Cámara, Mario Tello, Francisco Montero-Silva, Franco Cárdenas, Michael Seeger

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Siderophore-metal complexes in Paraburkholderia phymatum: structure elucidation of phymabactin.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Isolation of a novelFrontiers in microbiology · 2024
    Article
  8. Review
  9. Review
  10. Comparative genome analyses ofMicrobial genomics · 2020
    Article
  11. Article
  12. Genomic analysis of siderophore β-hydroxylases reveals divergent stereocontrol and expands the condensation domain family.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Journal of natural products · 2019
    Article
  14. Article
  15. β-Hydroxyaspartic acid in siderophores: biosynthesis and reactivity.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  16. Iron Acquisition Mechanisms and Their Role in the Virulence ofFrontiers in cellular and infection microbiology · 2017
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

María José Vargas-StraubeLaboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Center for Nanotechnology and Systems Biology & Centro de Biotecnología, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Beatriz CámaraLaboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Center for Nanotechnology and Systems Biology & Centro de Biotecnología, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Mario TelloCentro de Biotecnología Acuícola, Departamento de Biología, Universidad de Santiago de Chile, Santiago, Chile.
Francisco Montero-SilvaLaboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Center for Nanotechnology and Systems Biology & Centro de Biotecnología, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Franco CárdenasLaboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Center for Nanotechnology and Systems Biology & Centro de Biotecnología, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Michael SeegerLaboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Center for Nanotechnology and Systems Biology & Centro de Biotecnología, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Federico Santa María Technical University · CLUniversidad de Santiago de Chile · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

B. xenovorans LB400 is a model bacterium for the study of the metabolism of aromatic compounds. The aim of this study was the genomic and functional characterization of a non-ribosomal peptide synthetase containing gene cluster that encodes a siderophore in B. xenovorans LB400. The mba gene cluster from strain LB400 encodes proteins involved in the biosynthesis and transport of a hydroxamate-type siderophore. Strain LB400 has a unique mba gene organization, although mba gene clusters have been observed in diverse Burkholderiales. Bioinformatic analysis revealed the presence of promoters in the mba gene cluster that strongly suggest regulation by the ferric uptake regulator protein (Fur) and by the alternative RNA polymerase extracytoplasmic function sigma factor MbaF. Reverse transcriptase PCR analyses showed the expression of iron-regulated transcriptional units mbaFGHIJKL, mbaN, mbaABCE, mbaO, mbaP and mbaD genes under iron limitation. Chrome azurol S (CAS) assay strongly suggests that strain LB400 synthesized a siderophore under iron limitation. Mass spectrometry ESI-MS and MALDI-TOF-MS analyses revealed that the siderophore is a non-ribosomal peptide, and forms an iron complex with a molecular mass of 676 Da. Based on bioinformatic prediction, CAS assay and MS analyses, we propose that the siderophore is L-Nδ-hydroxy-Nδ-formylOrn-D-β-hydroxyAsp-L-Ser-L-Nδ-hydroxy-Nδ-formylOrn-1,4-diaminobutane that is closely related to malleobactin-type siderophores reported in B. thailandensis.

Indexed as

Bacterial ProteinsBurkholderiaMultigene FamilySiderophoresIon TransportIronBacterial ProteinsIronSiderophores

Identifiers

PMID26963250
PMCPMC4786211
OpenAlexW2294960366

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.